Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30346
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    28   1.2  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   2.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.7  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    26   6.3  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   8.4  

>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 90  VLEYVLPYTGVPFRNMSAIKDSRNINFNTKHLRKGDPLPPFNGKLRVYNMR-YCPYLSEP 266
           +L+Y++PY+ +PF  + A+    + NF  K+L +       NGK+     R Y    SEP
Sbjct: 312 LLDYLIPYSALPFSKI-AVDFHIDENFIEKNLLEIIEAKKLNGKVDSLQKRVYIEPSSEP 370


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 517 IQSLFIKILKFSDTVNEEHVAAYHKALDFIQEQLKNRGTVF 639
           +Q  F+  L  S   N E+  A  KALD  +++++NR  VF
Sbjct: 110 LQEEFMDYLNNSFLANLENSLAEFKALDVKEKKMENRRLVF 150


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 236 HEVLPLPQRTILALNAKQIDYEVVNIDLIDKPEWLTTKSAF 358
           + +LP+ +R I         + ++N D +  P W + +S F
Sbjct: 341 YRLLPVEERNISCSGRDDFAWGILNDDWVSHPTWASEESGF 381


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 684 KAISYNQRIQVRFRPEHSASVFQLFLDEI*SLVVRSNMLLIDSVREF 544
           ++IS  Q I++    EH+ S  Q FL+ + S + R    L+  +R F
Sbjct: 182 RSISREQMIEI-LEDEHAGSRLQGFLESVASFLNRKENSLLKYMRAF 227


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 38  GHAPNIFVVSRCSSYQSSIRIRL 106
           GH  N+ V++ C SY+ + RI+L
Sbjct: 365 GHESNVPVIACCESYKFTERIQL 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,616
Number of Sequences: 5004
Number of extensions: 59171
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)