Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30346
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)                  71   7e-13
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)               71   1e-12
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          47   2e-05
SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.41 
SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)                 31   0.96 
SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)               29   2.9  
SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)                     29   3.9  
SB_37619| Best HMM Match : CUB (HMM E-Value=1.9e-37)                   29   3.9  
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)                 29   3.9  
SB_14676| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_38757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_8108| Best HMM Match : GST_N (HMM E-Value=3.9e-14)
          Length = 238

 Score = 71.3 bits (167), Expect = 7e-13
 Identities = 33/87 (37%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
 Frame = +2

Query: 248 PLPQRTILALNAKQIDYEVVNIDLIDKPEW-LTTKSAFAKVPAIEIAEDVTIYESLVTVE 424
           P  +R  L L AK +DYE +NI+L +KP+W L   +    VP IE+ +   + ESL+  E
Sbjct: 28  PYAERPRLVLAAKGVDYECININLKNKPDWYLAEPNPRGLVPMIEMPDGRLLPESLLCCE 87

Query: 425 YLDEVYPKRPLLPQDPLKKALDKIIVE 505
           YLDE++P+ P+ P D  +K   +++++
Sbjct: 88  YLDELFPQNPMYPSDAFEKNRQRLLID 114



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +3

Query: 180 HLRKGDPLPPFNGKLRVYNMRYCPYLSEP 266
           HL  GDP PP   KLR+Y+MR+CPY   P
Sbjct: 5   HLSNGDPRPPPGDKLRLYSMRFCPYAERP 33



 Score = 32.7 bits (71), Expect = 0.31
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +3

Query: 645 GSEPGYADYMIWPWFEK 695
           G +PG AD+M+WP+FE+
Sbjct: 162 GEKPGMADFMLWPFFER 178


>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
 Frame = +2

Query: 248 PLPQRTILALNAKQIDYEVVNIDLIDKPEWLTTK-SAFAKVPAIEIAEDVTIYESLVTVE 424
           P  +R  L L AK +DYE VN++L  KPEW  T      KVP +E  +   I ES++  E
Sbjct: 39  PFAERPRLVLAAKGLDYECVNVNLKSKPEWFQTHPDCEGKVPTLETMDGKLIPESVIICE 98

Query: 425 YLDEVYPKRPLLPQDPLKKALDKIIVE 505
           +L++ Y K PL P DP  K+  K++ +
Sbjct: 99  FLEDYYRKIPLYPCDPYAKSRQKLLAQ 125



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 159 NINFNTKHLRKGD--PLPPFNGKLRVYNMRYCPYLSEP 266
           +I     H+ KG   P  P N KLR+Y+MR+CP+   P
Sbjct: 8   SITMPVTHISKGSSRPAKPQN-KLRLYSMRFCPFAERP 44


>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
 Frame = +2

Query: 248 PLPQRTILALNAKQIDYEVVNIDLIDK-PEWLTTKSAFAKVPAIEIAEDVTIYESLVTVE 424
           P  QR  +A+ AK+ ++E +  +  +K PEWL        VP I +     +YES + +E
Sbjct: 271 PFAQRAWIAMLAKKAEFEYIEQNPYNKTPEWLAINPN-GLVPVI-VHNGNAVYESSICIE 328

Query: 425 YLDEVYPKR-PLLPQDPLKKA 484
           ++DE +     +LP+DP K+A
Sbjct: 329 FIDEAFSTPVTILPKDPYKRA 349


>SB_16773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1644

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 505 STAPIQSLFIKILKFSDTVNEEHVAAYHKALDFIQEQLKNRGTVFWTEANL 657
           S +P  S  +K L F +TVN EH +   K +  +  ++   G   W  + L
Sbjct: 591 SLSPDDSYSLKTLPFHETVNGEHTSIAEKKVYVLPSEIPKAGLNIWERSGL 641


>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
          Length = 142

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +2

Query: 419 VEYLDEVYPKRPLLPQ-DPLKKAL 487
           +EYLDE  P  PLLP+ DP K+AL
Sbjct: 1   MEYLDETRPDPPLLPRGDPHKRAL 24


>SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)
          Length = 430

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 84  SQVLEYVLPYTGVPFRNMSAIKDSRNINFNTKHLRKGDPLPPFNGKLRVYNMRYCP 251
           +Q +++ LP TG+  ++ S I D ++       +R+ DPL  F G    ++   CP
Sbjct: 66  AQKMKFSLP-TGIVEQSASNIHDIKSSKSQNDKMRQDDPLCKFCGLRHSFSQGKCP 120


>SB_13167| Best HMM Match : APH (HMM E-Value=1e-04)
          Length = 374

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/28 (42%), Positives = 21/28 (75%)
 Frame = +1

Query: 532 IKILKFSDTVNEEHVAAYHKALDFIQEQ 615
           +KIL  SD+ NEE + A + A+D+++E+
Sbjct: 60  LKILNSSDSSNEELIYAENAAIDYLRER 87


>SB_37619| Best HMM Match : CUB (HMM E-Value=1.9e-37)
          Length = 149

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -2

Query: 721 LSSWANALSFSNQGHII*SAYPGSLPSRTQCLGFSTVPG*NLK 593
           LS          QG +    YPG  P+RT+C+     P  N K
Sbjct: 12  LSEACGGRQSGQQGVVFSPGYPGQYPTRTRCVWVLVAPSANQK 54


>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
          Length = 406

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 159 NINFNTKHLRKGDPLPPFNGKLRVYNMRYC---PYLSEP 266
           NI  NT HLR   PLP  + +L++  MRY    PY++ P
Sbjct: 330 NIRRNTIHLRPAAPLPT-DDRLQMMVMRYPASEPYIANP 367


>SB_14676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 905

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +3

Query: 84  SQVLEYVLPYTGVPFRNMSAIKDSRNINFNTKHLRKGDPLPPFNGKLRVYNMRYCP 251
           +Q +++ LP TG+  ++ S I D ++       +R+ DPL  F G    ++   CP
Sbjct: 176 TQKMKFSLP-TGIVEQSASNIYDIKSSKSQNNKVRQDDPLCKFCGLKHSFSKGKCP 230


>SB_38757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 571 HVAAYHKALDFIQEQLKNRGTVFWTEANLDT 663
           HVAA H  +D  +  LKN+G V  T A+L T
Sbjct: 56  HVAAAHDHVDCAEFLLKNKGNVNQTIADLIT 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,565,880
Number of Sequences: 59808
Number of extensions: 424376
Number of successful extensions: 930
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)