Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30346
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.2  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    23   2.9  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.2  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   6.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   6.8  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 725 HSFIMGKCSKLLEPRPYHII 666
           HS  +G  S++LE  PY II
Sbjct: 451 HSATLGYISRVLEKEPYVII 470


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 552 GHCQ*GACCCVPQGFR 599
           GHC+ G C C    F+
Sbjct: 72  GHCEKGVCICRKTSFK 87


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 437 PHLNIQLSLSFRKWS 393
           PH N    L+ RKWS
Sbjct: 109 PHRNSDRDLNIRKWS 123


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = +3

Query: 552 GHCQ*GACCC 581
           GHC+ G C C
Sbjct: 47  GHCEKGVCIC 56


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 167 VDISAVLNCRHISKWYTS 114
           VDIS ++N R+ +K YTS
Sbjct: 516 VDISKLVNKRNNAKIYTS 533


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 278 NAKQIDYEVVNIDLIDKP 331
           N+K++ Y ++NI+ I  P
Sbjct: 319 NSKKLYYNIINIEQIPVP 336


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 278 NAKQIDYEVVNIDLIDKP 331
           N+K++ Y ++NI+ I  P
Sbjct: 330 NSKKLYYNIINIEQIPVP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,038
Number of Sequences: 438
Number of extensions: 3882
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)