Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30345
(557 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 155 3e-39
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 155 3e-39
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 46 5e-06
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 26 3.3
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 4.3
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.3
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 26 4.3
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 5.7
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 7.5
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 7.5
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.5
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 25 7.5
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 10.0
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 155 bits (377), Expect = 3e-39
Identities = 69/84 (82%), Positives = 79/84 (94%)
Frame = +1
Query: 256 NRLPAAGSGXMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 435
NRLPAA G M++ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN K
Sbjct: 49 NRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPK 108
Query: 436 GEMKGSAITGPVAKECADLWPRIA 507
GEMKGSAITGPVAKECADLWPRIA
Sbjct: 109 GEMKGSAITGPVAKECADLWPRIA 132
Score = 66.9 bits (156), Expect = 2e-12
Identities = 27/45 (60%), Positives = 38/45 (84%)
Frame = +2
Query: 119 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGR 253
RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G R
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGAR 47
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 155 bits (377), Expect = 3e-39
Identities = 69/84 (82%), Positives = 79/84 (94%)
Frame = +1
Query: 256 NRLPAAGSGXMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 435
NRLPAA G M++ATVKKGKP+LRKK+MPA+V+RQRK +RR+DGV++YFEDNAGVIVN K
Sbjct: 49 NRLPAASCGDMVLATVKKGKPDLRKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPK 108
Query: 436 GEMKGSAITGPVAKECADLWPRIA 507
GEMKGSAITGPVAKECADLWPRIA
Sbjct: 109 GEMKGSAITGPVAKECADLWPRIA 132
Score = 66.9 bits (156), Expect = 2e-12
Identities = 27/45 (60%), Positives = 38/45 (84%)
Frame = +2
Query: 119 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGR 253
RGRG ++G K+R++LGLPV A++NCADN+GAKNLY+++V G R
Sbjct: 3 RGRGAASGTKYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGAR 47
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 45.6 bits (103), Expect = 5e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +1
Query: 325 RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKE 480
R + A+++R + P RR DG ++ F+DNA V+VN + E G+ I VA E
Sbjct: 58 RGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVLVNKECEPLGTRILSVVANE 109
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +1
Query: 304 KKGKPELRKKVMPAVVIRQRK---PFRRRDGVFIYFEDNA 414
KKG P RK P+++ PF RD +FI E NA
Sbjct: 337 KKGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 4.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 452 EPFISPLLLTMTPALSSKYINTPS 381
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 4.3
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = -1
Query: 494 HRSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTA 342
+ + H GP++ ++ L P +S Y+N + L+GF+ ++ A
Sbjct: 963 YNATHFEHIGPMLEATWMPILAALSNPLQNSDYVNELNMCLDGFQLVVRIA 1013
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 500 RGHRSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLLNGF 363
R H+ AH+ AEP ++P++ + P+++ +TPS L F
Sbjct: 60 RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 289 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGV 420
IV KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.0 bits (52), Expect = 7.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = -3
Query: 246 LIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPR 124
L+P A Y P +A T+PT P I++ PAEPP+
Sbjct: 175 LLPPNAPYYHEIEPPRTASN-TSPT--PNSIKSAHPAEPPK 212
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 7.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 411 IVLKVYKYSITPSERFPLPDDHCRHYLFPEFR 316
+V +++++ E FPLP LFP R
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFPTLR 469
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 211 CPCVVGAVDYCSHWETQGDTEFR 143
CPC + + SHW+ + D FR
Sbjct: 14 CPCFLSCCAFMSHWKLK-DFSFR 35
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 235 PRYQRSPNRLPAAGS 279
P Q+SPNRLP G+
Sbjct: 331 PNVQKSPNRLPPVGN 345
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 24.6 bits (51), Expect = 10.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 268 PAVCSATFDTLDSDHIQILCPCVVGAVDYCSHWE 167
P + SA D L D+I+ CV + +CS +E
Sbjct: 275 PPLVSAITDRLSFDNIKPALICVGHLLQFCSSFE 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,645
Number of Sequences: 5004
Number of extensions: 44877
Number of successful extensions: 129
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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