Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30345
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)           94   8e-20
SB_52932| Best HMM Match : Ank (HMM E-Value=0)                         29   2.6  
SB_10243| Best HMM Match : Ank (HMM E-Value=0)                         29   2.6  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_39091| Best HMM Match : dsDNA_bind (HMM E-Value=2.3)                27   7.9  
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)          27   7.9  

>SB_294| Best HMM Match : Ribosomal_L14 (HMM E-Value=4.1e-23)
          Length = 145

 Score = 93.9 bits (223), Expect = 8e-20
 Identities = 44/60 (73%), Positives = 51/60 (85%)
 Frame = +1

Query: 256 NRLPAAGSGXMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 435
           NRLPAA SG M++ATVKKGKPELRKKVMPAVVIRQRK +RR++GVF+YFE N  V V  +
Sbjct: 69  NRLPAAASGDMVLATVKKGKPELRKKVMPAVVIRQRKAYRRKNGVFLYFEANIKVRVRKQ 128



 Score = 87.0 bits (206), Expect = 9e-18
 Identities = 38/45 (84%), Positives = 43/45 (95%)
 Frame = +2

Query: 119 RGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGR 253
           RGRGG++G KFRI+LGLPVGAVINCADNTG KNLY+IAV+GIKGR
Sbjct: 23  RGRGGTSGGKFRIALGLPVGAVINCADNTGGKNLYIIAVKGIKGR 67


>SB_52932| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1266

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 167 LPVGAVINCADNTGAKNLYVIAVQG 241
           L +GA ++CADN G   L  +A QG
Sbjct: 913 LKLGATVDCADNEGRTPLQAVAWQG 937


>SB_10243| Best HMM Match : Ank (HMM E-Value=0)
          Length = 475

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 167 LPVGAVINCADNTGAKNLYVIAVQG 241
           L +GA ++CADN G   L  +A QG
Sbjct: 109 LKLGATVDCADNEGRTPLQAVAWQG 133


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -3

Query: 450  ALHFALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 319
            A  FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 3671 ASRFAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 3714


>SB_39762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 441 FALVIDYDTRIVLKVYKYSITPSERFPLPDDHCRHYL-FPEF 319
           FA+   Y  R  L  Y+Y  TPS+ F    D CR  L FP F
Sbjct: 2   FAMSQAY-VRYFLYTYRYCATPSDLFNFIRDKCRASLRFPLF 42


>SB_46476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 250 TFDTLDSDHIQILCPCVVGAVDYCSHWETQGDT 152
           T   + + +I   CP VVG V+ CS W     T
Sbjct: 330 TVKDVATKYIYDRCPAVVGVVEACSSWAVLAKT 362


>SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -2

Query: 268 PAVCSATFDTLDSDHIQILCPCVVGAVDYCSHWETQGDTEFR 143
           PA+ S  FD   S   Q++C C    +     WE    T+++
Sbjct: 435 PAIISLPFDACLSSGDQVICMCSDTGLGETPKWEPINKTQYK 476


>SB_39091| Best HMM Match : dsDNA_bind (HMM E-Value=2.3)
          Length = 227

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 554 FFLILNVYSSDRARV*AIRGHRSAHSLATGPVMAEPFISPLL 429
           F LI  + S+ +A     RG+R    + + P  + PF+SP+L
Sbjct: 40  FSLIDVITSTLQASTPCSRGYRIRAGVRSSPATSRPFVSPVL 81


>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
          Length = 593

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 473 ATGPVMAEPFISPLLLTMTPALSSKYINTPSRLLNGFRCLMTTAGIT 333
           AT  V A    + L  T+ PAL++K+IN  +R  N  + L+    +T
Sbjct: 186 ATSMVTAPTSKTSLTTTLRPALTAKHINITNRTANVVKKLIKIGLLT 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,641,089
Number of Sequences: 59808
Number of extensions: 369208
Number of successful extensions: 996
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)