Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30345
(557 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 155 2e-38
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 5.2
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 27 9.1
Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical pr... 27 9.1
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 27 9.1
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 27 9.1
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 155 bits (376), Expect = 2e-38
Identities = 72/84 (85%), Positives = 76/84 (90%)
Frame = +1
Query: 256 NRLPAAGSGXMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 435
NRLP+AG G M V +VKKGKPELRKKV+ VVIRQRK FRR+DG FIYFEDNAGVIVNNK
Sbjct: 50 NRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNK 109
Query: 436 GEMKGSAITGPVAKECADLWPRIA 507
GEMKGSAITGPVAKECADLWPRIA
Sbjct: 110 GEMKGSAITGPVAKECADLWPRIA 133
Score = 91.5 bits (217), Expect = 4e-19
Identities = 41/48 (85%), Positives = 47/48 (97%)
Frame = +2
Query: 110 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGR 253
MSKRGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GR
Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGR 48
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 426 DYDTRIVLKVYKYSITPSERFPL 358
DY + V K+Y YSIT RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +1
Query: 160 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 255
PG P G+ N G CD CP + +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 196 RQHRGKESVCDRCPRYQRSPNRLPAAGSGXMIVATVKKGKPELRKKVMPAVVIRQRK-PF 372
R+ R PR +RSP++ P A + K P R++ PA R+R+ P
Sbjct: 438 RRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSP--RRRRSPAAAPRRRQSPQ 495
Query: 373 RRR 381
RRR
Sbjct: 496 RRR 498
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.2 protein.
Length = 316
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 151 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 255
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical
protein F15H10.1 protein.
Length = 316
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 151 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 255
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical
protein F58B3.5 protein.
Length = 917
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +2
Query: 107 KMSKRGRGGSAGAKF--RISLG---LPVGAVINCADNTGAKNLYV 226
K K+G+GG+A A I +G + VG +I C + A LYV
Sbjct: 737 KEQKKGKGGAAAAPVDDTIDVGRLDMRVGRIIKCEKHPDADALYV 781
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 151 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 255
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 151 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 255
P PG+P + + G E CD CP + +P
Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,156,152
Number of Sequences: 27780
Number of extensions: 268310
Number of successful extensions: 733
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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