BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30345 (557 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 155 2e-38 Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 5.2 Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 6.9 Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 27 9.1 Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 27 9.1 Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 27 9.1 Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical pr... 27 9.1 X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 27 9.1 X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 27 9.1 >U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal protein, large subunitprotein 23 protein. Length = 140 Score = 155 bits (376), Expect = 2e-38 Identities = 72/84 (85%), Positives = 76/84 (90%) Frame = +1 Query: 256 NRLPAAGSGXMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 435 NRLP+AG G M V +VKKGKPELRKKV+ VVIRQRK FRR+DG FIYFEDNAGVIVNNK Sbjct: 50 NRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNK 109 Query: 436 GEMKGSAITGPVAKECADLWPRIA 507 GEMKGSAITGPVAKECADLWPRIA Sbjct: 110 GEMKGSAITGPVAKECADLWPRIA 133 Score = 91.5 bits (217), Expect = 4e-19 Identities = 41/48 (85%), Positives = 47/48 (97%) Frame = +2 Query: 110 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGR 253 MSKRGRGG++GAKFRISLGLPVGAV+NCADNTGAKNL+VI+V GI+GR Sbjct: 1 MSKRGRGGASGAKFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGR 48 >Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical protein T23D5.9 protein. Length = 354 Score = 27.9 bits (59), Expect = 5.2 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -3 Query: 426 DYDTRIVLKVYKYSITPSERFPL 358 DY + V K+Y YSIT RFP+ Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184 >Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical protein C44C10.1 protein. Length = 300 Score = 27.5 bits (58), Expect = 6.9 Identities = 11/32 (34%), Positives = 14/32 (43%) Frame = +1 Query: 160 PGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 255 PG P G+ N G CD CP + +P Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298 >Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical protein F28D9.1 protein. Length = 601 Score = 27.1 bits (57), Expect = 9.1 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Frame = +1 Query: 196 RQHRGKESVCDRCPRYQRSPNRLPAAGSGXMIVATVKKGKPELRKKVMPAVVIRQRK-PF 372 R+ R PR +RSP++ P A + K P R++ PA R+R+ P Sbjct: 438 RRRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSP--RRRRSPAAAPRRRQSPQ 495 Query: 373 RRR 381 RRR Sbjct: 496 RRR 498 >Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical protein F15H10.2 protein. Length = 316 Score = 27.1 bits (57), Expect = 9.1 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = +1 Query: 151 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 255 P PG+P + + G E CD CP + +P Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314 >Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical protein F15H10.1 protein. Length = 316 Score = 27.1 bits (57), Expect = 9.1 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = +1 Query: 151 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 255 P PG+P + + G E CD CP + +P Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314 >Z73427-5|CAA97803.1| 917|Caenorhabditis elegans Hypothetical protein F58B3.5 protein. Length = 917 Score = 27.1 bits (57), Expect = 9.1 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 5/45 (11%) Frame = +2 Query: 107 KMSKRGRGGSAGAKF--RISLG---LPVGAVINCADNTGAKNLYV 226 K K+G+GG+A A I +G + VG +I C + A LYV Sbjct: 737 KEQKKGKGGAAAAPVDDTIDVGRLDMRVGRIIKCEKHPDADALYV 781 >X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. Length = 316 Score = 27.1 bits (57), Expect = 9.1 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = +1 Query: 151 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 255 P PG+P + + G E CD CP + +P Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314 >X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. Length = 316 Score = 27.1 bits (57), Expect = 9.1 Identities = 11/35 (31%), Positives = 16/35 (45%) Frame = +1 Query: 151 PYLPGSPSGSSNQLRRQHRGKESVCDRCPRYQRSP 255 P PG+P + + G E CD CP + +P Sbjct: 280 PGAPGAPGQAGAPGQDGESGSEGACDHCPPPRTAP 314 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,156,152 Number of Sequences: 27780 Number of extensions: 268310 Number of successful extensions: 733 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 703 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 733 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 1144922904 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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