Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30345
(557 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi... 154 4e-38
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B) 154 4e-38
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden... 154 4e-38
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ... 35 0.032
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ... 35 0.032
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si... 33 0.17
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 28 3.7
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 28 3.7
At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2... 27 8.5
>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
tabacum]
Length = 140
Score = 154 bits (373), Expect = 4e-38
Identities = 68/84 (80%), Positives = 79/84 (94%)
Frame = +1
Query: 256 NRLPAAGSGXMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 435
NRLP+A G M++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN K
Sbjct: 50 NRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 109
Query: 436 GEMKGSAITGPVAKECADLWPRIA 507
GEMKGSAITGP+ KECADLWPRIA
Sbjct: 110 GEMKGSAITGPIGKECADLWPRIA 133
Score = 87.8 bits (208), Expect = 4e-18
Identities = 38/48 (79%), Positives = 45/48 (93%)
Frame = +2
Query: 110 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGR 253
MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGR
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGR 48
>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
Length = 140
Score = 154 bits (373), Expect = 4e-38
Identities = 68/84 (80%), Positives = 79/84 (94%)
Frame = +1
Query: 256 NRLPAAGSGXMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 435
NRLP+A G M++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN K
Sbjct: 50 NRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 109
Query: 436 GEMKGSAITGPVAKECADLWPRIA 507
GEMKGSAITGP+ KECADLWPRIA
Sbjct: 110 GEMKGSAITGPIGKECADLWPRIA 133
Score = 87.8 bits (208), Expect = 4e-18
Identities = 38/48 (79%), Positives = 45/48 (93%)
Frame = +2
Query: 110 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGR 253
MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGR
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGR 48
>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
identical to GB:AAB80655
Length = 140
Score = 154 bits (373), Expect = 4e-38
Identities = 68/84 (80%), Positives = 79/84 (94%)
Frame = +1
Query: 256 NRLPAAGSGXMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNK 435
NRLP+A G M++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN K
Sbjct: 50 NRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPK 109
Query: 436 GEMKGSAITGPVAKECADLWPRIA 507
GEMKGSAITGP+ KECADLWPRIA
Sbjct: 110 GEMKGSAITGPIGKECADLWPRIA 133
Score = 87.8 bits (208), Expect = 4e-18
Identities = 38/48 (79%), Positives = 45/48 (93%)
Frame = +2
Query: 110 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGR 253
MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGR
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGR 48
>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 172
Score = 35.1 bits (77), Expect = 0.032
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Frame = +1
Query: 280 GXMIVATVKKGKPELRKK---VMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK- 447
G IVA+VK+ P + K V+ VV+R R DG + F+DNA V+V++K +
Sbjct: 79 GDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTK 138
Query: 448 ------GSAITGPVAKE 480
G+ + GPV E
Sbjct: 139 TDRQPIGTRVFGPVPHE 155
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 167 LPVGAVINCADNTGAKNLYVIAVQGIKGRR 256
+ +G V+ DN+GAK V+ +Q +KG++
Sbjct: 47 IQMGTVLKVVDNSGAKK--VMCIQALKGKK 74
>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 173
Score = 35.1 bits (77), Expect = 0.032
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 10/77 (12%)
Frame = +1
Query: 280 GXMIVATVKKGKPELRKK---VMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK- 447
G IVA+VK+ P + K V+ VV+R R DG + F+DNA V+V++K +
Sbjct: 80 GDTIVASVKEAMPNGKVKKGAVVYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTK 139
Query: 448 ------GSAITGPVAKE 480
G+ + GPV E
Sbjct: 140 TDRQPIGTRVFGPVPHE 156
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 167 LPVGAVINCADNTGAKNLYVIAVQGIKGRR 256
+ +G V+ DN+GAK V+ +Q +KG++
Sbjct: 48 IQMGTVLKVVDNSGAKK--VMCIQALKGKK 75
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
similar to GB:Z98756 from (Mycobacterium leprae)
Length = 196
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/50 (42%), Positives = 29/50 (58%)
Frame = +1
Query: 301 VKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 450
+ KGK + + V+ VV+R P R DG + F+DNA V+V K E KG
Sbjct: 104 IPKGKVK-KGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVVGIK-EKKG 151
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 342 RHYLFPEFRFTLFDCGHNHXPGTGRRQSVRRPLI 241
R YL PEF+F P GRRQS + ++
Sbjct: 204 RVYLLPEFQFVQVFVAGLQAPSMGRRQSTQEAVV 237
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 414 RIVLKVYKYSITPSERFPLPDDHCRHYL 331
RI L V K + P P P +CRHYL
Sbjct: 333 RIALGVKKLKLKPVAPKPKPIKYCRHYL 360
>At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2)
(YLS6) identical to SP|O64637 Cytochrome P450 76C2 (EC
1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for
cytochrome P450 (CYP76C2), partial cds GI:13122289
Length = 512
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 222 YRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRPLLDIL 106
+ F VLS +I T RPR R P+ P P L I+
Sbjct: 10 FPLFCFVLSFFIIFFTTTRPRSSRKVVPSPPGPPRLPII 48
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,447,024
Number of Sequences: 28952
Number of extensions: 249011
Number of successful extensions: 742
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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