Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30344
(411 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 84 2e-16
BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 84 2e-16
BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 84 2e-16
BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 84 2e-16
AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 84 2e-16
AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36 p... 44 2e-04
U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein ... 29 4.5
CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein. 29 4.5
BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein pr... 29 4.5
BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protei... 29 4.5
AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protei... 29 4.5
AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protei... 29 4.5
BC065563-1|AAH65563.1| 941|Homo sapiens vacuolar protein sortin... 29 7.9
AK223158-1|BAD96878.1| 941|Homo sapiens vacuolar protein sortin... 29 7.9
AF308800-1|AAG34677.1| 941|Homo sapiens vacuolar protein sortin... 29 7.9
AB027508-1|BAA95163.2| 941|Homo sapiens hVPS11 protein. 29 7.9
>CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein.
Length = 105
Score = 84.2 bits (199), Expect = 2e-16
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3
Query: 15 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 194
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 195 AQYEKRAMELLKVSKDKRAL 254
A YE+RAMELLKVSKDKRAL
Sbjct: 51 APYERRAMELLKVSKDKRAL 70
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +2
Query: 236 KRQACSEFLKRRLGTHIRAKRKREELSNVLAQMRK 340
K + +F+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 84.2 bits (199), Expect = 2e-16
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3
Query: 15 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 194
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 195 AQYEKRAMELLKVSKDKRAL 254
A YE+RAMELLKVSKDKRAL
Sbjct: 51 APYERRAMELLKVSKDKRAL 70
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +2
Query: 236 KRQACSEFLKRRLGTHIRAKRKREELSNVLAQMRK 340
K + +F+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 84.2 bits (199), Expect = 2e-16
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3
Query: 15 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 194
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 195 AQYEKRAMELLKVSKDKRAL 254
A YE+RAMELLKVSKDKRAL
Sbjct: 51 APYERRAMELLKVSKDKRAL 70
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +2
Query: 236 KRQACSEFLKRRLGTHIRAKRKREELSNVLAQMRK 340
K + +F+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 84.2 bits (199), Expect = 2e-16
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3
Query: 15 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 194
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 195 AQYEKRAMELLKVSKDKRAL 254
A YE+RAMELLKVSKDKRAL
Sbjct: 51 APYERRAMELLKVSKDKRAL 70
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +2
Query: 236 KRQACSEFLKRRLGTHIRAKRKREELSNVLAQMRK 340
K + +F+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 84.2 bits (199), Expect = 2e-16
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +3
Query: 15 MAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGH 194
MA R+ +AVGL KGHK TK + R +R +G TKH+KFVRD++REV G
Sbjct: 1 MALRYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGF 50
Query: 195 AQYEKRAMELLKVSKDKRAL 254
A YE+RAMELLKVSKDKRAL
Sbjct: 51 APYERRAMELLKVSKDKRAL 70
Score = 54.4 bits (125), Expect = 1e-07
Identities = 25/35 (71%), Positives = 30/35 (85%)
Frame = +2
Query: 236 KRQACSEFLKRRLGTHIRAKRKREELSNVLAQMRK 340
K + +F+K+R+GTHIRAKRKREELSNVLA MRK
Sbjct: 65 KDKRALKFIKKRVGTHIRAKRKREELSNVLAAMRK 99
>AB046410-1|BAB21256.1| 32|Homo sapiens ribosomal protein L36
protein.
Length = 32
Score = 44.0 bits (99), Expect = 2e-04
Identities = 19/28 (67%), Positives = 24/28 (85%)
Frame = +2
Query: 236 KRQACSEFLKRRLGTHIRAKRKREELSN 319
K + +F+K+R+GTHIRAKRKREELSN
Sbjct: 5 KDKRALKFIKKRVGTHIRAKRKREELSN 32
>U93871-1|AAB68767.1| 400|Homo sapiens RaP2 interacting protein 8
protein.
Length = 400
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 69 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 221
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>CR456748-1|CAG33029.1| 405|Homo sapiens RPIP8 protein.
Length = 405
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 69 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 221
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>BX537443-1|CAD97685.1| 400|Homo sapiens hypothetical protein
protein.
Length = 400
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 69 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 221
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 254 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 303
>BC006194-1|AAH06194.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 69 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 221
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AF055026-1|AAC09366.1| 405|Homo sapiens RaP2 interacting protein 8
protein.
Length = 405
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 69 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 221
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 259 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 308
>AB209802-1|BAD93039.1| 481|Homo sapiens RaP2 interacting protein 8
variant protein.
Length = 481
Score = 29.5 bits (63), Expect = 4.5
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +3
Query: 69 KISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAME 221
+I +KG ++ +R+R ++LK L+ ++ + L E Q EKR +E
Sbjct: 294 RIVYAQKGYLEELVRLRESQLKDLEAENRRLQLQL-EEAAAQNQREKRELE 343
>BC065563-1|AAH65563.1| 941|Homo sapiens vacuolar protein sorting
11 homolog (S. cerevisiae) protein.
Length = 941
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 410 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 321
F FF ++LV L+ DG PG P+S A
Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAA 39
>AK223158-1|BAD96878.1| 941|Homo sapiens vacuolar protein sorting
11 (yeast homolog) variant protein.
Length = 941
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 410 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 321
F FF ++LV L+ DG PG P+S A
Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAA 39
>AF308800-1|AAG34677.1| 941|Homo sapiens vacuolar protein sorting
protein 11 protein.
Length = 941
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 410 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 321
F FF ++LV L+ DG PG P+S A
Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAA 39
>AB027508-1|BAA95163.2| 941|Homo sapiens hVPS11 protein.
Length = 941
Score = 28.7 bits (61), Expect = 7.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 410 FFFFKRKLVYLSLNGDGDEPGRLPSSSERA 321
F FF ++LV L+ DG PG P+S A
Sbjct: 10 FVFFDKELVKEPLSNDGAAPGATPASGSAA 39
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,603,697
Number of Sequences: 237096
Number of extensions: 911100
Number of successful extensions: 1729
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1724
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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