BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30344 (411 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal prote... 66 9e-12 Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical pr... 30 0.75 Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical pr... 30 0.75 AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 29 1.3 AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical ... 28 2.3 AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical ... 28 2.3 Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical pr... 27 5.3 X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen... 27 5.3 U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st... 27 5.3 AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical ... 27 7.0 >U00033-6|AAC48295.2| 104|Caenorhabditis elegans Ribosomal protein, large subunitprotein 36 protein. Length = 104 Score = 66.1 bits (154), Expect = 9e-12 Identities = 34/74 (45%), Positives = 49/74 (66%) Frame = +3 Query: 33 IAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKR 212 +AVGL KGH T++ ++ R R KG+ +K +K VR+LVRE+ G A YE+R Sbjct: 9 LAVGLNKGHAATQLP----------VKQRQNRHKGVASKKTKIVRELVREITGFAPYERR 58 Query: 213 AMELLKVSKDKRAL 254 +E+L++SKDKRAL Sbjct: 59 VLEMLRISKDKRAL 72 Score = 44.8 bits (101), Expect = 2e-05 Identities = 21/35 (60%), Positives = 25/35 (71%) Frame = +2 Query: 236 KRQACSEFLKRRLGTHIRAKRKREELSNVLAQMRK 340 K + +FLKRR+GTH RAK KREEL NV+ RK Sbjct: 67 KDKRALKFLKRRIGTHRRAKGKREELQNVIIAQRK 101 >Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical protein T08G5.5b protein. Length = 926 Score = 29.9 bits (64), Expect = 0.75 Identities = 15/47 (31%), Positives = 29/47 (61%) Frame = +3 Query: 117 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALS 257 R LK L+ HS + ++ ++ HA YE+RA+ L ++ + ++AL+ Sbjct: 679 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQALA 725 >Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical protein T08G5.5a protein. Length = 923 Score = 29.9 bits (64), Expect = 0.75 Identities = 15/47 (31%), Positives = 29/47 (61%) Frame = +3 Query: 117 RPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALS 257 R LK L+ HS + ++ ++ HA YE+RA+ L ++ + ++AL+ Sbjct: 676 RKRLLKFLEVSHSYSPQTVLLQLAPHAFYEERALILGRLKQHEQALA 722 >AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical protein Y47D3A.26 protein. Length = 1205 Score = 29.1 bits (62), Expect = 1.3 Identities = 13/45 (28%), Positives = 24/45 (53%) Frame = +3 Query: 114 IRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 248 ++ ++ L T + L+REV G Y++R E LK+ K+ + Sbjct: 140 VKQGKINELATSPDAYKLKLLREVAGTRVYDERKEESLKILKETK 184 >AC006651-7|AAX22287.1| 786|Caenorhabditis elegans Hypothetical protein H06I04.3c protein. Length = 786 Score = 28.3 bits (60), Expect = 2.3 Identities = 12/40 (30%), Positives = 26/40 (65%) Frame = +3 Query: 129 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 248 L+ Q +HS+ VR++ + + EK+ +EL++++K K+ Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771 >AC006651-6|AAF39868.1| 833|Caenorhabditis elegans Hypothetical protein H06I04.3a protein. Length = 833 Score = 28.3 bits (60), Expect = 2.3 Identities = 12/40 (30%), Positives = 26/40 (65%) Frame = +3 Query: 129 LKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKR 248 L+ Q +HS+ VR++ + + EK+ +EL++++K K+ Sbjct: 732 LENDQMEHSEKVREMKKVYANATRKEKKKVELVRMTKGKK 771 >Z70680-8|CAA94570.2| 349|Caenorhabditis elegans Hypothetical protein C25G4.7 protein. Length = 349 Score = 27.1 bits (57), Expect = 5.3 Identities = 10/24 (41%), Positives = 18/24 (75%) Frame = +3 Query: 162 VRDLVREVVGHAQYEKRAMELLKV 233 +RD + EV+G+ Q++K +E+L V Sbjct: 133 IRDFLCEVIGNRQFKKYKLEILTV 156 >X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin protein. Length = 1603 Score = 27.1 bits (57), Expect = 5.3 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Frame = +3 Query: 3 QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 170 ++E++A R ++ LR+ H+ +++ K + K I T+ KF+R+ Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185 Query: 171 LVREVVGHAQYE 206 + RE G +YE Sbjct: 1186 IEREYKGIPEYE 1197 >U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin structural genes (yolk protein genes) protein 5 protein. Length = 1603 Score = 27.1 bits (57), Expect = 5.3 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Frame = +3 Query: 3 QSEIMAPRFEIAVGLRK----GHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRD 170 ++E++A R ++ LR+ H+ +++ K + K I T+ KF+R+ Sbjct: 1126 RTELLAARPQMPSSLRQLREQPHREVQLAFNAKWGSSKKSEITVNAQLEQSTEQKKFIRN 1185 Query: 171 LVREVVGHAQYE 206 + RE G +YE Sbjct: 1186 IEREYKGIPEYE 1197 >AF125959-1|AAD14733.1| 475|Caenorhabditis elegans Hypothetical protein H23N18.4 protein. Length = 475 Score = 26.6 bits (56), Expect = 7.0 Identities = 10/21 (47%), Positives = 17/21 (80%) Frame = +3 Query: 171 LVREVVGHAQYEKRAMELLKV 233 +V+++V + +YEK A ELL+V Sbjct: 434 IVKDMVSNPKYEKNAQELLRV 454 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,148,515 Number of Sequences: 27780 Number of extensions: 145735 Number of successful extensions: 332 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 321 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 331 length of database: 12,740,198 effective HSP length: 74 effective length of database: 10,684,478 effective search space used: 662437636 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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