Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30344
         (411 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S ...    61   3e-10
At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)            60   6e-10
At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S ...    60   8e-10
At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S ...    53   9e-08
At1g34590.1 68414.m04299 hypothetical protein                          28   2.1  
At2g47115.1 68415.m05884 expressed protein                             28   2.8  
At5g05440.1 68418.m00586 expressed protein low similarity to cyt...    27   3.7  
At1g61030.1 68414.m06871 expressed protein                             27   6.5  

>At3g53740.2 68416.m05937 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 112

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 34/72 (47%), Positives = 43/72 (59%)
 Frame = +3

Query: 39  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 218
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 219 ELLKVSKDKRAL 254
           ELLKV KDKRAL
Sbjct: 62  ELLKVGKDKRAL 73



 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +2

Query: 263 KRRLGTHIRAKRKREELSNVLAQMR 337
           KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 77  KRKLGTHKRAKRKREEMSSVLRKMR 101


>At2g37600.1 68415.m04613 60S ribosomal protein L36 (RPL36A)
          Length = 113

 Score = 60.1 bits (139), Expect = 6e-10
 Identities = 35/72 (48%), Positives = 42/72 (58%)
 Frame = +3

Query: 39  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 218
           VGL KGH  T+          + +  RP   KG  +K + F+R L+REV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRIT 61

Query: 219 ELLKVSKDKRAL 254
           ELLKV KDKRAL
Sbjct: 62  ELLKVGKDKRAL 73



 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +2

Query: 263 KRRLGTHIRAKRKREELSNVLAQMR 337
           KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 77  KRKLGTHKRAKRKREEMSSVLRKMR 101


>At5g02450.1 68418.m00171 60S ribosomal protein L36 (RPL36C) 60S
           ribosomal protein L36, Arabidopsis thaliana,
           EMBL:AC004684
          Length = 108

 Score = 59.7 bits (138), Expect = 8e-10
 Identities = 35/72 (48%), Positives = 42/72 (58%)
 Frame = +3

Query: 39  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 218
           VGL KGH  TK          +    RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 8   VGLNKGHVVTK----------REQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 57

Query: 219 ELLKVSKDKRAL 254
           ELLKV KDKRAL
Sbjct: 58  ELLKVGKDKRAL 69



 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +2

Query: 263 KRRLGTHIRAKRKREELSNVLAQMR 337
           KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 73  KRKLGTHKRAKRKREEMSSVLRKMR 97


>At3g53740.1 68416.m05936 60S ribosomal protein L36 (RPL36B) 60S
           RIBOSOMAL PROTEIN L36 - Schizosaccharomyces pombe,
           swissprot:Q92365
          Length = 103

 Score = 52.8 bits (121), Expect = 9e-08
 Identities = 30/69 (43%), Positives = 40/69 (57%)
 Frame = +3

Query: 39  VGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAM 218
           VGL KGH  T+          + +  RP   KG  +K + F+R+L++EV G A YEKR  
Sbjct: 12  VGLNKGHVVTR----------RELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRIT 61

Query: 219 ELLKVSKDK 245
           ELLKV+K K
Sbjct: 62  ELLKVAKRK 70



 Score = 42.7 bits (96), Expect = 9e-05
 Identities = 19/25 (76%), Positives = 23/25 (92%)
 Frame = +2

Query: 263 KRRLGTHIRAKRKREELSNVLAQMR 337
           KR+LGTH RAKRKREE+S+VL +MR
Sbjct: 68  KRKLGTHKRAKRKREEMSSVLRKMR 92


>At1g34590.1 68414.m04299 hypothetical protein
          Length = 820

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 3   QSEIMAPRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPAR 128
           + ++ AP  E A     GH++ +  A + G+TD+A  + PA+
Sbjct: 770 KDDLKAPALESAPLSPGGHRSVESVADKAGVTDQAGSLLPAK 811


>At2g47115.1 68415.m05884 expressed protein
          Length = 300

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -3

Query: 382 IYHLMVMVMSLGGCLPHLSEHVAKFFTLPLGADVCAQSSLQELRARL 242
           IY  M +V S+ GCL HL E      TL    DV  +    E R RL
Sbjct: 112 IYFAMGIVASVYGCLIHLKE-----LTLETDEDVVVEKVGDEFRRRL 153


>At5g05440.1 68418.m00586 expressed protein low similarity to
           cytokinin-specific binding protein [Vigna radiata]
           GI:4190976
          Length = 203

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 334 HLSEHVAKFFTLPLGADVCAQSSLQELRA 248
           H+ EHVA   T  +G D C  S +Q + A
Sbjct: 40  HVPEHVAMHHTHDVGPDQCCSSVVQMIHA 68


>At1g61030.1 68414.m06871 expressed protein 
          Length = 840

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -3

Query: 337 PHLSEHVAKFFTLPLGADVCAQSSLQELRARLSFDTLSNSIALFSY*ACPTTSRTKSRTN 158
           PHL+  V K F   + +D C+ +    +++ LS    + S  L     C TT +  S+++
Sbjct: 412 PHLASAVKKGFVTIISSDTCSTTGFSSIKS-LSVSKRNQSAFLV---GCSTTPKPGSQSS 467

Query: 157 L 155
           +
Sbjct: 468 V 468


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,778,229
Number of Sequences: 28952
Number of extensions: 139271
Number of successful extensions: 340
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)