Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30343
         (506 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)              101   3e-22
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)                    33   0.14 
SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_33414| Best HMM Match : TSP_1 (HMM E-Value=0.00041)                 28   3.8  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         27   6.7  
SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8)            27   8.9  

>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score =  101 bits (243), Expect = 3e-22
 Identities = 48/76 (63%), Positives = 57/76 (75%)
 Frame = +3

Query: 24  MADVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLA 203
           M+D E +  T    +G  MD+N ALQEVLKTALIH GL  GLHE AK+LDKR+A LC+L+
Sbjct: 1   MSDAEGDDTTQQPAAGGAMDINTALQEVLKTALIHDGLSRGLHEAAKSLDKREAHLCILS 60

Query: 204 ENCDEAAYKKLVQALC 251
            NCDEA Y KLV+ALC
Sbjct: 61  NNCDEAMYVKLVEALC 76



 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 34/42 (80%), Positives = 41/42 (97%)
 Frame = +2

Query: 254 QHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 379
           +H IPL+KVD++KKLGEWAGLCKIDK+GKARK+VGCSCVV+K
Sbjct: 78  EHGIPLLKVDDSKKLGEWAGLCKIDKEGKARKVVGCSCVVVK 119


>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
          Length = 1328

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
 Frame = +3

Query: 84  VNVALQEVLKTALIHGGLVHGLHETAKA---LDKRQAVLC--VLAENCDEAAYKKLVQ-A 245
           V++   +   T L+HGG+V    ET K        QA++C  ++A   DE   + +V   
Sbjct: 241 VSLLKSQKATTELLHGGIVIVAMETMKTKQDCGNLQAIICSLLVALANDELGQRVIVDLG 300

Query: 246 LCNNIRFHWSRLTTTKSLE-NGLVS-ARLTRMARQGKLSAAPVLSSKISARKLQRWM 410
           +CN IR    R      ++  GL + A L+ M  + +  +  +++ K++ + L  WM
Sbjct: 301 VCNEIRTVLRRHRNHADIQKRGLEAFALLSPMMIKSQDISMCLVNGKLTGQSLDHWM 357


>SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 376 DDNTGAADNFPCLAILVNLAETSPFSKLF 290
           DD    +D +PC+ I+VN++ T   +K F
Sbjct: 10  DDGLTCSDVYPCVEIMVNISSTGSETKKF 38


>SB_33414| Best HMM Match : TSP_1 (HMM E-Value=0.00041)
          Length = 428

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 187 TACLLSRALAVS*RPCTRPPWIKAVFSTSCSATFTSMLLPDKMGLVGTSTSTS 29
           TA + S   ++   P    P +KA+     SAT TS++ P      G++ +TS
Sbjct: 212 TAMVHSAGQSIKDSPSASSPLVKAISQIETSATATSLIRPTITLNTGSAMTTS 264


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 400 SVGCAQGLPQVVELILRCNANPY 468
           S+ CA G   VVEL+L   ANPY
Sbjct: 83  SLACAGGHLAVVELLLAHGANPY 105


>SB_51044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 220 ASSQFSAKTHSTACLLSRALAVS*RPCTRPP 128
           A+S+F  +TH   CL+S     S  P  +PP
Sbjct: 465 ATSEFMMRTHQPTCLVSGRCQKSLSPPPQPP 495


>SB_46466| Best HMM Match : Neur_chan_memb (HMM E-Value=4.8)
          Length = 498

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/62 (32%), Positives = 26/62 (41%)
 Frame = -2

Query: 205 SAKTHSTACLLSRALAVS*RPCTRPPWIKAVFSTSCSATFTSMLLPDKMGLVGTSTSTSA 26
           S   HS +   S A + S  PC  P      FS+S      +  L     L+GTST TS 
Sbjct: 140 SMSNHSASLSSSTASSSSFPPCGVPS--NTPFSSSTQKPANAHSLKTMTSLIGTSTLTSG 197

Query: 25  MV 20
            +
Sbjct: 198 EI 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,550,099
Number of Sequences: 59808
Number of extensions: 308612
Number of successful extensions: 809
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 809
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)