Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30343
(506 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC095424-1|AAH95424.1| 132|Homo sapiens ribosomal protein S12 p... 101 2e-21
BC071930-1|AAH71930.1| 132|Homo sapiens ribosomal protein S12 p... 101 2e-21
BC017321-1|AAH17321.1| 132|Homo sapiens ribosomal protein S12 p... 101 2e-21
AL137783-3|CAC12946.1| 132|Homo sapiens ribosomal protein S12 p... 101 2e-21
AB061840-1|BAB79478.1| 132|Homo sapiens ribosomal protein S12 p... 101 2e-21
X53505-1|CAA37582.1| 132|Homo sapiens ribosomal protein S12 pro... 99 8e-21
BC034968-1|AAH34968.1| 538|Homo sapiens jub, ajuba homolog (Xen... 29 9.3
BC007580-1|AAH07580.1| 538|Homo sapiens JUB protein protein. 29 9.3
AY169959-1|AAO37641.1| 538|Homo sapiens ajuba protein. 29 9.3
>BC095424-1|AAH95424.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 101 bits (241), Expect = 2e-21
Identities = 40/59 (67%), Positives = 53/59 (89%)
Frame = +2
Query: 254 QHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 430
+HQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 71 EHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 99.5 bits (237), Expect = 6e-21
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +3
Query: 60 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLAENCDEAAYKKLV 239
I +G MDVN ALQEVLKTALIH GL G+ E AKALDKRQA LCVLA NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65
Query: 240 QALCNNIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 353
+ALC + + ++ K L + ++ R + K+
Sbjct: 66 EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103
>BC071930-1|AAH71930.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 101 bits (241), Expect = 2e-21
Identities = 40/59 (67%), Positives = 53/59 (89%)
Frame = +2
Query: 254 QHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 430
+HQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 71 EHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 99.5 bits (237), Expect = 6e-21
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +3
Query: 60 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLAENCDEAAYKKLV 239
I +G MDVN ALQEVLKTALIH GL G+ E AKALDKRQA LCVLA NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65
Query: 240 QALCNNIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 353
+ALC + + ++ K L + ++ R + K+
Sbjct: 66 EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103
>BC017321-1|AAH17321.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 101 bits (241), Expect = 2e-21
Identities = 40/59 (67%), Positives = 53/59 (89%)
Frame = +2
Query: 254 QHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 430
+HQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 71 EHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 99.5 bits (237), Expect = 6e-21
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +3
Query: 60 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLAENCDEAAYKKLV 239
I +G MDVN ALQEVLKTALIH GL G+ E AKALDKRQA LCVLA NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65
Query: 240 QALCNNIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 353
+ALC + + ++ K L + ++ R + K+
Sbjct: 66 EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103
>AL137783-3|CAC12946.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 101 bits (241), Expect = 2e-21
Identities = 40/59 (67%), Positives = 53/59 (89%)
Frame = +2
Query: 254 QHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 430
+HQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 71 EHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 99.5 bits (237), Expect = 6e-21
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +3
Query: 60 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLAENCDEAAYKKLV 239
I +G MDVN ALQEVLKTALIH GL G+ E AKALDKRQA LCVLA NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65
Query: 240 QALCNNIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 353
+ALC + + ++ K L + ++ R + K+
Sbjct: 66 EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103
>AB061840-1|BAB79478.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 101 bits (241), Expect = 2e-21
Identities = 40/59 (67%), Positives = 53/59 (89%)
Frame = +2
Query: 254 QHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 430
+HQI L+KVD+NKKLGEW GLCKID++GK RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 71 EHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 99.5 bits (237), Expect = 6e-21
Identities = 51/98 (52%), Positives = 63/98 (64%)
Frame = +3
Query: 60 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLAENCDEAAYKKLV 239
I +G MDVN ALQEVLKTALIH GL G+ E AKALDKRQA LCVLA NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLV 65
Query: 240 QALCNNIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 353
+ALC + + ++ K L + ++ R + K+
Sbjct: 66 EALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103
>X53505-1|CAA37582.1| 132|Homo sapiens ribosomal protein S12
protein.
Length = 132
Score = 99.1 bits (236), Expect = 8e-21
Identities = 39/59 (66%), Positives = 52/59 (88%)
Frame = +2
Query: 254 QHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYLK 430
+HQI L+KVD+NKKLGEW GLCKID++G RK+VGCSCVV+KD+G+E+ A DV+++Y K
Sbjct: 71 EHQINLIKVDDNKKLGEWVGLCKIDREGNPRKVVGCSCVVVKDYGKESQAKDVIEEYFK 129
Score = 92.3 bits (219), Expect = 9e-19
Identities = 49/98 (50%), Positives = 60/98 (61%)
Frame = +3
Query: 60 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLAENCDEAAYKKLV 239
I +G MDVN ALQEVLKTALIH GL G+ E AKALDKRQA LCV A NCDE Y KLV
Sbjct: 6 IAAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVQASNCDEPMYVKLV 65
Query: 240 QALCNNIRFHWSRLTTTKSLENGLVSARLTRMARQGKL 353
+AL + + ++ K L + ++ R K+
Sbjct: 66 EALLAEHQINLIKVDDNKKLGEWVGLCKIDREGNPRKV 103
>BC034968-1|AAH34968.1| 538|Homo sapiens jub, ajuba homolog
(Xenopus laevis) protein.
Length = 538
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 356 RQFSLPCHPCQSCRDQPILQAFCCCQP 276
R + C+ C+ CR Q + CCC P
Sbjct: 487 RDYHFECYHCEDCRMQLSDEEGCCCFP 513
>BC007580-1|AAH07580.1| 538|Homo sapiens JUB protein protein.
Length = 538
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 356 RQFSLPCHPCQSCRDQPILQAFCCCQP 276
R + C+ C+ CR Q + CCC P
Sbjct: 487 RDYHFECYHCEDCRMQLSDEEGCCCFP 513
>AY169959-1|AAO37641.1| 538|Homo sapiens ajuba protein.
Length = 538
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 356 RQFSLPCHPCQSCRDQPILQAFCCCQP 276
R + C+ C+ CR Q + CCC P
Sbjct: 487 RDYHFECYHCEDCRMQLSDEEGCCCFP 513
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,801,867
Number of Sequences: 237096
Number of extensions: 1479942
Number of successful extensions: 3643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3640
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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