Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30343
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    75   3e-14
U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical pr...    29   1.9  
U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    28   4.5  
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AC024863-1|AAF60877.1|  481|Caenorhabditis elegans Prion-like-(q...    27   5.9  
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    27   7.8  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 31/57 (54%), Positives = 42/57 (73%)
 Frame = +2

Query: 254 QHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDY 424
           +HQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS  V+ ++G E     +L DY
Sbjct: 79  EHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILTDY 135



 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 40/77 (51%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = +3

Query: 24  MADVEVEVPTNPI-LSGNNMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVL 200
           M+D   +V   P  ++   MD   AL+ VL+ A    GL  GLHET KALDKR+A  CVL
Sbjct: 1   MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60

Query: 201 AENCDEAAYKKLVQALC 251
           AENCDE  Y KLV+ LC
Sbjct: 61  AENCDEPQYVKLVETLC 77


>U21319-5|AAL02454.1| 1100|Caenorhabditis elegans Hypothetical
           protein C30G12.6a protein.
          Length = 1100

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 230 LVCGFITVLSQNT*YCLPLVKSFSGFVK 147
           L+C  I ++ Q +  CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>U21319-4|AAL02455.1| 1097|Caenorhabditis elegans Hypothetical
           protein C30G12.6b protein.
          Length = 1097

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 230 LVCGFITVLSQNT*YCLPLVKSFSGFVK 147
           L+C  I ++ Q +  CLPLVK F+ + K
Sbjct: 818 LMCAIIMLVFQKSNECLPLVKIFASYCK 845


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 84  VNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLAENCDEAAY 227
           V VAL +   T LIH   +H L++  K L     V C+L ++  +A Y
Sbjct: 16  VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 314 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 421
           L K  K+ K +K+     + ++DF EETP  +  +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523


>AC024863-1|AAF60877.1|  481|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 89,
           isoform a protein.
          Length = 481

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -2

Query: 142 CTRPPW-IKAVFSTSCSATFTSMLLPDKMGLVGTSTSTSAMVVDYLT 5
           C   PW IK   +T C     S+L P + GLVG    T+ +++  LT
Sbjct: 331 CKNCPWGIKD--NTYCQDDHGSVLDPSEAGLVGMGWRTATIILAILT 375


>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
           spermatogenesis protein15 protein.
          Length = 1219

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 270 WSRLTTTKSLENGLVSARLTRMARQGKLSAAPVLSSKISARKLQRWMC 413
           + RL        G V+AR+T +A  G   A    S  ++ R    W C
Sbjct: 11  FGRLVWISDEAEGFVAARITDIAENGFTLATEKTSETVNRRYEDTWAC 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,242,841
Number of Sequences: 27780
Number of extensions: 225501
Number of successful extensions: 644
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)