Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30343
(506 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 89 2e-18
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 89 2e-18
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 89 2e-18
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 85 2e-17
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 85 2e-17
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 32 0.19
At4g03270.1 68417.m00446 cyclin family protein similar to CycD3;... 29 1.8
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 27 5.5
At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase / lon... 27 9.6
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 9.6
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg... 27 9.6
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +2
Query: 257 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 427
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
Score = 71.3 bits (167), Expect = 3e-13
Identities = 31/59 (52%), Positives = 46/59 (77%)
Frame = +3
Query: 75 NMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLAENCDEAAYKKLVQALC 251
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +2
Query: 257 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 427
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
Score = 71.3 bits (167), Expect = 3e-13
Identities = 31/59 (52%), Positives = 46/59 (77%)
Frame = +3
Query: 75 NMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLAENCDEAAYKKLVQALC 251
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +2
Query: 257 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 427
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
Score = 71.3 bits (167), Expect = 3e-13
Identities = 31/59 (52%), Positives = 46/59 (77%)
Frame = +3
Query: 75 NMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLAENCDEAAYKKLVQALC 251
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALC 82
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 85.4 bits (202), Expect = 2e-17
Identities = 34/57 (59%), Positives = 46/57 (80%)
Frame = +2
Query: 257 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 427
H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET AL ++ ++
Sbjct: 85 HEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHI 141
Score = 68.1 bits (159), Expect = 3e-12
Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +3
Query: 27 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLA 203
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 204 ENCDEAAYKKLVQALCNNIRFHWSRLTTTKS 296
E+C++ Y KLV+ALC + H RL T S
Sbjct: 67 EDCNQPDYVKLVKALCAD---HEVRLLTVPS 94
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 85.4 bits (202), Expect = 2e-17
Identities = 34/57 (59%), Positives = 46/57 (80%)
Frame = +2
Query: 257 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 427
H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET AL ++ ++
Sbjct: 85 HEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHI 141
Score = 68.1 bits (159), Expect = 3e-12
Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +3
Query: 27 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHETAKALDKRQAVLCVLA 203
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 204 ENCDEAAYKKLVQALCNNIRFHWSRLTTTKS 296
E+C++ Y KLV+ALC + H RL T S
Sbjct: 67 EDCNQPDYVKLVKALCAD---HEVRLLTVPS 94
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 32.3 bits (70), Expect = 0.19
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 168 LDKRQAVLCVLAENCDEAAYKKLVQALCNNIRFHWSRLTTTKSLENGLVSAR 323
L RQA++C L+E+C ++Y K VQ N + ++ + +SL + AR
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINEVGYYVDIDESDRSLRKKVADAR 404
>At4g03270.1 68417.m00446 cyclin family protein similar to CycD3;2
[Lycopersicon esculentum] GI:6434199 ; contains Pfam
profiles PF00134: Cyclin, N-terminal domain, PF02984:
Cyclin, C-terminal domain
Length = 302
Score = 29.1 bits (62), Expect = 1.8
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 1/123 (0%)
Frame = -2
Query: 430 LEVVLEHIQRWSFLAEIFDDNTGAADNFPCLAILVNLAETSPFSKLFVVVNLDQWNLMLL 251
+E LEH S L F+D+T + P LV + P S F + + L
Sbjct: 1 MEFHLEHPLSHSSLHNNFNDDTDY-ETLPHSLFLVEF-QHMPSSHYFHSLKSSAFLLSNR 58
Query: 250 HRA*TSFL-YAASSQFSAKTHSTACLLSRALAVS*RPCTRPPWIKAVFSTSCSATFTSML 74
++A +S Y+ + T+ L R L+ P ++P WI + S SC + M
Sbjct: 59 NQAISSITQYSRKFDDPSLTYLAVNYLDRFLSSEDMPQSKP-WILKLISLSCVSLSAKMR 117
Query: 73 LPD 65
PD
Sbjct: 118 KPD 120
>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
similar to beta-glucan-elicitor receptor GI:1752734 from
[Glycine max]
Length = 745
Score = 27.5 bits (58), Expect = 5.5
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 391 GNSSVGCAQGLPQVVELILRCNANPY 468
G SS+ C G ++ +++ N NPY
Sbjct: 233 GVSSINCGDGFSGIIRIVVLPNPNPY 258
>At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to
acyl-CoA synthetase (MF7P) from Brassica napus
[gi:1617270]
Length = 666
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 103 SCSATFTSMLLPDKMGLVGT 44
SC+ TF S LPD++G++GT
Sbjct: 423 SCAGTFVS--LPDELGMLGT 440
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 287 NKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 394
NKK L K+ KD KA K+ GCS + + + E
Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHE 481
>At1g78700.1 68414.m09173 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 325
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 130 PWIKAVFSTSCSATFTSMLLPDKMGLVGTSTS 35
PW+K + +TS S+ +S LP+ + + G S S
Sbjct: 134 PWLKHLSTTSSSSASSSSRLPNYLYIPGGSIS 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,685,066
Number of Sequences: 28952
Number of extensions: 208072
Number of successful extensions: 660
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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