Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30341
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     28   0.37 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   0.64 
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   3.4  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    24   4.5  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    23   7.9  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    23   7.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    23   7.9  

>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 17/65 (26%), Positives = 28/65 (43%)
 Frame = +2

Query: 11  NEVFNFIEDLQGGMRDIDRDKTDTINNSCNDRKAVTM*REREGRKGARVSDE*AYTTISI 190
           N+V NF++      R+  R     +     D KA+T+   R+  +    + +     I I
Sbjct: 285 NKVANFVKAFNQDGREFIRSSVQKLLGFSKDEKAITVFPPRKRARKLEENKDPVRQDIPI 344

Query: 191 SPVFS 205
            PVFS
Sbjct: 345 PPVFS 349


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 0.64
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 160  RNSSTFSSFPLPSHSNCFSVIAAIV 86
            RN S   S P P+H N FS+I  I+
Sbjct: 1027 RNLSMHWSIPFPTHHNFFSIIPFIL 1051


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 248 KARFCIQNPWLFVLKRRQG*WIWWCMPTH 162
           +  FC  +P+  V   R G  I+W M TH
Sbjct: 233 QVNFCNDSPYNLVSCSRDGSIIFWDMRTH 261


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 217 YSCLREDRADGYGGVCLLIRNSSTFSSFPLP 125
           +S + E   D    V   ++N   FSS+PLP
Sbjct: 397 HSSITEKTRDIAKNVATWLKNGENFSSWPLP 427


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 177 VYAYSSETLAPFLPSLSLH 121
           VY Y ++T  PF  +++LH
Sbjct: 400 VYIYDTQTCKPFYRAVNLH 418


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 48  PPCKSSMKLKTSFQF 4
           PPC S M   T++QF
Sbjct: 72  PPCTSMMGFSTNYQF 86


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 157 NSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPS 44
           NSS F  F     SN  S++ A +D        V HPS
Sbjct: 237 NSSRFGKFIRIEFSNNGSIVGANLDWYLLEKSRVIHPS 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,025,827
Number of Sequences: 5004
Number of extensions: 17184
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)