Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30341
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0660 + 5029070-5029177,5029303-5029398,5029494-5029556,502...    26   5.2  
10_01_0003 + 46158-46428,46588-46706,46819-46928,48977-49415,495...    26   6.9  
06_03_0999 - 26752410-26752523,26752601-26752830,26752914-267531...    26   6.9  
06_01_0240 - 1822086-1822216,1822311-1822367,1822788-1822842,182...    26   6.9  

>01_01_0660 +
           5029070-5029177,5029303-5029398,5029494-5029556,
           5029836-5029913,5030446-5030614,5030797-5031180,
           5031959-5032042,5032143-5032288,5032810-5033070,
           5033147-5033328,5033421-5033586,5033650-5033703,
           5034702-5034965,5035088-5035303,5035388-5035540,
           5035630-5035827
          Length = 873

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 100 IAAIVDGICFVSIYVPHPSLQIFNEIKNFISVL 2
           IA +++  C +       +L I+NEI+NFI+V+
Sbjct: 820 IAGVLERACLMLRPSCAENLPIYNEIENFIAVI 852


>10_01_0003 +
           46158-46428,46588-46706,46819-46928,48977-49415,
           49511-49633,49805-50106,50143-50350,50729-51448
          Length = 763

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 121 HSNCFSVIAAIVDGICFVSIYVPHPSL 41
           H +  ++I A  D +C V  YVP+ SL
Sbjct: 533 HPHLVTLIGACPDALCLVYEYVPNGSL 559


>06_03_0999 -
           26752410-26752523,26752601-26752830,26752914-26753169,
           26753763-26753828,26753921-26754046,26754148-26754288,
           26754377-26754387,26754523-26754670,26755326-26755454,
           26755573-26755710,26755808-26755876,26755955-26756023,
           26756565-26756720,26756885-26756985,26757068-26757215,
           26757540-26757702,26757833-26757965,26758049-26758226,
           26758330-26758572,26758664-26758732,26759063-26759187,
           26759727-26759766,26760756-26760812,26762831-26762935
          Length = 1004

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 171 HTPPYPSALSSLKHE*PGILNTKSGFSQF 257
           H    P A SSL H+   IL+TKS   QF
Sbjct: 210 HVKEVPFARSSLNHDDIFILDTKSKIFQF 238


>06_01_0240 -
           1822086-1822216,1822311-1822367,1822788-1822842,
           1824585-1824674,1824848-1824995,1825095-1825351
          Length = 245

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 202 EDRADGYGGVCLLIR-NSSTFSSFPLPSHS 116
           E R DGY  V  L++ N  TF+  PL SH+
Sbjct: 100 EMRTDGYVRVRDLLKLNLQTFAKIPLKSHT 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,510,587
Number of Sequences: 37544
Number of extensions: 112775
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)