Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30341
         (310 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF277379-1|AAF78764.1|  989|Homo sapiens vitamin D receptor-inte...    30   1.2  
D50920-1|BAA09479.2| 1006|Homo sapiens KIAA0130 protein.               27   8.5  
BC011375-1|AAH11375.1|  989|Homo sapiens THRAP4 protein protein.       27   8.5  
AF055995-1|AAC39855.1|  989|Homo sapiens thyroid hormone recepto...    27   8.5  

>AF277379-1|AAF78764.1|  989|Homo sapiens vitamin D
           receptor-interacting protein complex component DRIP100
           protein.
          Length = 989

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -1

Query: 223 PGYSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVD 83
           P + C R D     G +  L+ NSS      +  H  C S+ AAI++
Sbjct: 542 PDHPCFRPDSTK-VGSLVALLNNSSEMKLVQMKWHEACLSISAAILE 587


>D50920-1|BAA09479.2| 1006|Homo sapiens KIAA0130 protein.
          Length = 1006

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 223 PGYSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVD 83
           P + C R D       V LL  NSS      +  H  C S+ AAI++
Sbjct: 559 PDHPCFRPDSTKVESLVALL-NNSSEMKLVQMKWHEACLSISAAILE 604


>BC011375-1|AAH11375.1|  989|Homo sapiens THRAP4 protein protein.
          Length = 989

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 223 PGYSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVD 83
           P + C R D       V LL  NSS      +  H  C S+ AAI++
Sbjct: 542 PDHPCFRPDSTKVESLVALL-NNSSEMKLVQMKWHEACLSISAAILE 587


>AF055995-1|AAC39855.1|  989|Homo sapiens thyroid hormone
           receptor-associated protein complex component TRAP100
           protein.
          Length = 989

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 223 PGYSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVD 83
           P + C R D       V LL  NSS      +  H  C S+ AAI++
Sbjct: 542 PDHPCFRPDSTKVESLVALL-NNSSEMKLVQMKWHEACLSISAAILE 587


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,283,812
Number of Sequences: 237096
Number of extensions: 625906
Number of successful extensions: 1204
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)