Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30341
         (310 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      29   1.2  
AE014296-636|AAF47758.2|  296|Drosophila melanogaster CG12077-PA...    27   4.7  

>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 253 WLKPDFVFKIPGYSCLREDRADGY-GGVCLLIRNSSTFSSFP-LPSH 119
           WL     F IP Y+  R DR +   GGV + + N+      P + SH
Sbjct: 47  WLTHSDRFNIPEYTIYRNDRKESRGGGVAIAVSNTLIHEQIPCIKSH 93


>AE014296-636|AAF47758.2|  296|Drosophila melanogaster CG12077-PA
           protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
 Frame = -1

Query: 220 GYSCLREDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIY-VPHPS 44
           G  CL       Y    LL+  +  F  +P+ + +N  +     +  IC +++Y +  P 
Sbjct: 187 GAICLASRLPTSYHAFVLLVEAAVFFVLYPIMTEANWHAGFMLPIFAICCMALYCISRPV 246

Query: 43  LQIFNEIKNFIS 8
           L ++     FI+
Sbjct: 247 LYLYASTTIFIN 258


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,019,989
Number of Sequences: 53049
Number of extensions: 191358
Number of successful extensions: 432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 589756776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)