Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30341
(310 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80028-2|AAN73869.1| 351|Caenorhabditis elegans Serpentine rece... 29 0.66
Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z78546-5|CAO79773.1| 962|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z78546-4|CAB01771.3| 920|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z29645-1|CAA82753.1| 522|Caenorhabditis elegans kinesin light c... 26 4.7
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ... 26 4.7
AF022981-10|AAG24203.1| 360|Caenorhabditis elegans Serpentine r... 26 6.2
AF067950-4|AAG24157.1| 351|Caenorhabditis elegans Serpentine re... 25 8.1
>U80028-2|AAN73869.1| 351|Caenorhabditis elegans Serpentine
receptor, class h protein88 protein.
Length = 351
Score = 29.1 bits (62), Expect = 0.66
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -1
Query: 184 YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGI--CFVSIYVPHPSLQIFN-EIKNF 14
+GG C+L ++ SS+ +P + F V + D C V+ Y+ P+L F+ + NF
Sbjct: 45 FGGYCILYKSPKEMSSYRVPLFN--FHVWTCLADVFLNCLVTPYIFLPTLTGFSVGLLNF 102
Query: 13 ISV 5
+ V
Sbjct: 103 LGV 105
>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical
protein T06D8.10 protein.
Length = 1490
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 154 SSTFSSFPLPSHSNCFSVIAAIVDGIC 74
SST S+ P+P+ +CF+ GIC
Sbjct: 141 SSTISNCPIPTIDHCFATNYRSFSGIC 167
>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical
protein T06D8.10 protein.
Length = 1490
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 154 SSTFSSFPLPSHSNCFSVIAAIVDGIC 74
SST S+ P+P+ +CF+ GIC
Sbjct: 141 SSTISNCPIPTIDHCFATNYRSFSGIC 167
>Z78546-5|CAO79773.1| 962|Caenorhabditis elegans Hypothetical
protein T21H8.1b protein.
Length = 962
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 205 REDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVD 83
R +D YG VC+L ++ T SS S ++ AA+VD
Sbjct: 4 RHSISDAYGAVCILPEDTLTVSS----SQNSHIDAFAALVD 40
>Z78546-4|CAB01771.3| 920|Caenorhabditis elegans Hypothetical
protein T21H8.1a protein.
Length = 920
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 205 REDRADGYGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVD 83
R +D YG VC+L ++ T SS S ++ AA+VD
Sbjct: 4 RHSISDAYGAVCILPEDTLTVSS----SQNSHIDAFAALVD 40
>Z29645-1|CAA82753.1| 522|Caenorhabditis elegans kinesin light
chain (isoform 2) protein.
Length = 522
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 81 PSTIAAMTEKQLLCEGRGKEEKVLEFLMSRHTPPYPSALSSLKHE*PGILNTKSGFSQFQ 260
P + LLC+ +GK E+V E R Y S L + P + NTK+ S
Sbjct: 350 PDVAKQLNNLALLCQNQGKYEEV-EKYYKRALEIYESKLGP---DDPNVANTKNNLSSAY 405
Query: 261 IEK 269
+++
Sbjct: 406 LKQ 408
>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
protein F07G11.9 protein.
Length = 2025
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 175 VCLLIRNSSTFSSFPLPSHSNC 110
VC+ + S+ +SF PS SNC
Sbjct: 118 VCVAVGTKSSRNSFAAPSQSNC 139
>AF022981-10|AAG24203.1| 360|Caenorhabditis elegans Serpentine
receptor, class h protein82 protein.
Length = 360
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -1
Query: 184 YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGICFVSIYVPHPSLQIFN-EIKNFIS 8
+GG C+L +++S S+ LP + F + + Y PSL F+ NF+
Sbjct: 45 FGGYCILFKSTSQMGSYRLPLFNFHFWTCLVDIMINALATPYFFFPSLAGFSVGFLNFLG 104
Query: 7 V 5
V
Sbjct: 105 V 105
>AF067950-4|AAG24157.1| 351|Caenorhabditis elegans Serpentine
receptor, class h protein87 protein.
Length = 351
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = -1
Query: 184 YGGVCLLIRNSSTFSSFPLPSHSNCFSVIAAIVDGI--CFVSIYVPHPSLQIFN-EIKNF 14
+GG C+L ++ S++ +P + F V + D C + Y+ P+L F+ + NF
Sbjct: 45 FGGYCILYKSPKEMSTYRIPLFN--FHVWTCLADVFLNCLGTPYIFLPTLTGFSVGLLNF 102
Query: 13 ISV 5
+ V
Sbjct: 103 LGV 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,654,534
Number of Sequences: 27780
Number of extensions: 95809
Number of successful extensions: 230
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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