Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30340X
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 30 0.22
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 29 0.66
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc... 27 1.5
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 2.0
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 27 2.0
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 26 3.5
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 3.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.5
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 4.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 4.7
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 4.7
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 6.2
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 25 6.2
SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomy... 25 6.2
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.1
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 25 8.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.1
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 8.1
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 25 8.1
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 8.1
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 25 8.1
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 8.1
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.3 bits (65), Expect = 0.22
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Frame = +3
Query: 12 STQSETHTKQSHTEHSSIKHVHSGTHK------YITTSEDINNRTTSEDINDRTISQKRP 173
S+ S T S SSI + SG + + S +++ T+S +IS
Sbjct: 540 SSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSS-- 597
Query: 174 ESTSSSDIIARTRSPSVNDRNVVRSSTVEKL*TKQTSKTLI 296
STSS+ A T SPS ++ SST+ T TS +I
Sbjct: 598 -STSSTFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMI 637
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.7 bits (61), Expect = 0.66
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = +3
Query: 12 STQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSS 191
S+ S + ++ + S S + + ++SED ++ ++S D + S+ S+SSS
Sbjct: 146 SSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSS 205
Query: 192 DIIARTRSPSVNDRNVVRSSTVE 260
D + + S + + SS E
Sbjct: 206 DSESESSSEGSDSSSSSSSSESE 228
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 12 STQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSS 191
S+ S + ++ + S S + + ++SED ++ ++S D + S+ S+SSS
Sbjct: 200 SSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSS 259
Query: 192 D 194
D
Sbjct: 260 D 260
Score = 26.2 bits (55), Expect = 3.5
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 54 HSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSSD 194
HSS + SG+ + S + ++SED ND + S ES SSS+
Sbjct: 97 HSSSEASGSGSSSDESDSSSSESESSSED-NDSSSSSSDSESESSSE 142
Score = 26.2 bits (55), Expect = 3.5
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +3
Query: 57 SSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSSDIIARTRSPSVNDRN 236
SS S + + ++SED ++ ++S D + S+ S+SSSD + + S + +
Sbjct: 107 SSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSS 166
Query: 237 VVRSSTVE 260
SS E
Sbjct: 167 SSSSSESE 174
>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
synthase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 447
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 24 ETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTS 134
+ H K++ T SI+ + SGT+ Y+T +D+ R+ S
Sbjct: 409 QAHLKKNFTPKGSIERLRSGTY-YLTGIDDMFRRSYS 444
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 27.1 bits (57), Expect = 2.0
Identities = 16/69 (23%), Positives = 33/69 (47%)
Frame = +3
Query: 57 SSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSSDIIARTRSPSVNDRN 236
S+ K V G ++++ S + + + ND +Q PE T+S + +PS++
Sbjct: 778 SNGKIVEKGNYEHLFVSTNSELKQQLSEFNDEKDTQPLPEHTTSYPSTQISLAPSIHVEG 837
Query: 237 VVRSSTVEK 263
+ S+ E+
Sbjct: 838 LETYSSSER 846
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 27.1 bits (57), Expect = 2.0
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = +3
Query: 57 SSIKHV-HSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSS-DIIARTRSPSVND 230
S + H SG H T + + EDI+D I + S S+S D + + S++D
Sbjct: 389 SQLNHYSESGAHAADATKSSVAHNEKVEDISDSDIPIMKTSSNSTSLDADRDSDTSSISD 448
Query: 231 RNVVRSSTVEKL*TKQTSKTL 293
+ S+ E+L + T+
Sbjct: 449 TSSNSSAPHEQLNATSLASTV 469
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +2
Query: 335 TEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQ 460
++K + KW+ RN + +G P N +P + P D+
Sbjct: 498 SDKAIEAVKWIAEERNSSILYDFLASQGRPSNKKPKEVPMDE 539
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 3.5
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -3
Query: 274 FVYNFSTVDDRTTLRSFTLGDRVLAMISEDDVDSGRFCEIVRSFISS 134
F+ ++T D+ L S TLG R+ + E + S FC I + S
Sbjct: 642 FICTYATDDEFAPLCS-TLGQRLEDLEDEKSIRSAEFCYIASKSLQS 687
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 3.5
Identities = 22/71 (30%), Positives = 33/71 (46%)
Frame = +3
Query: 12 STQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSS 191
S QS T S + +S I + + T TTSE+ + T+ ++ S + + SSS
Sbjct: 256 SQQSTESTSSSASAYSYITTLQTATTAQQTTSENTYS-TSGPNLTTSNTSPQISSTISSS 314
Query: 192 DIIARTRSPSV 224
I SPSV
Sbjct: 315 SFI--VESPSV 323
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 126 TTSEDINDRTISQKRPESTSSSDIIARTRSPSVN 227
TTSE +R ++ ES S D+ ++ SPSV+
Sbjct: 191 TTSEAFIERLQNELELESISEDDLYSKRLSPSVS 224
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 4.7
Identities = 27/90 (30%), Positives = 34/90 (37%)
Frame = +3
Query: 15 TQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSSD 194
T+S + T + T SS + S T TTS I S ++ P STSS+
Sbjct: 89 TESTSSTSSASTTGSSSSPLPS-TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTS 147
Query: 195 IIARTRSPSVNDRNVVRSSTVEKL*TKQTS 284
I S S D N T T TS
Sbjct: 148 IPIPPTSTSSTDTNSNPLPTTSTSCTTSTS 177
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/43 (27%), Positives = 17/43 (39%)
Frame = +2
Query: 407 GDKGGPRNVRPIQSPKDQPHGQPSNFKQNGGQTIPPWSRVTRK 535
G K G ++ P+ + F NGG P W + T K
Sbjct: 590 GRKTGSKHYAPLSDETNNKRAFLDAFLGNGGNLTPNWKKQTPK 632
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 6.2
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +3
Query: 54 HSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSSDIIARTRSPSVNDR 233
HS ++ + + K T +DI + SE+ N T + E+ SSS I + S V +
Sbjct: 12 HSPVEKLSAQLEK-TTLLQDIPPGSLSENDNSTTFIKPPLETASSSTPIPSSSSSGVLNP 70
Query: 234 NVVRSSTV 257
+ VR V
Sbjct: 71 SSVRGKPV 78
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 386 EVDLVADGDKGGPRNVRPIQSPKDQPHGQPSNFKQNGGQTIP 511
+V++ A + P P Q+ QP Q F+Q TIP
Sbjct: 500 QVNMYAQNNPVNPSTTNPFQNFLRQPSYQGMQFEQQQPTTIP 541
>SPAC13G7.03 |||up-frameshift suppressor3 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +3
Query: 135 EDINDRTISQKRPESTSSSDIIARTRSPSVNDRNV--VRSSTVEKL*TKQ 278
+ ++DR S+K+P+ T S+ A S + +D+ +SS +K+ +K+
Sbjct: 220 DKVSDRKKSKKKPKKTPVSNSTASQASENASDKKTKEKKSSGKQKIASKK 269
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 8.1
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Frame = +3
Query: 105 SEDINNRTTSEDINDRTISQKRPESTSSSDII-----------ARTRSPSVNDRNVVRSS 251
S D NN+ ND T + E S+S+++ A T+SP ++ NVV++S
Sbjct: 40 SNDGNNQVNEPTGNDNTQVVENTEDISASNVVSAEGAEASTGDASTQSPETSE-NVVKNS 98
Query: 252 TVEKL*TKQTSKTLIML 302
E + K + L ++
Sbjct: 99 VDESVAEKPEKEDLAVI 115
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 8.1
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = +3
Query: 42 SHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTI-SQKRPESTSSSDIIAR--TR 212
S ++ I+ + + + + ++ + T+ E ++ + SQ +TS+ A TR
Sbjct: 2 STNPNAGIQPLTNSISQSASAHPELYHTTSHESVSTYQLQSQLSHSATSNLSTAANFHTR 61
Query: 213 SPSVNDRNVVRSSTVEKL*TKQTSK 287
P ND N STV + + SK
Sbjct: 62 PPIANDENAQNLSTVNSSHSSELSK 86
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.1
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = +3
Query: 42 SHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSS-----DIIAR 206
S + SS + S T +++S + + S + T S P STSSS +++
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSST-SSSTFSSAAPTSTSSSYLSSSSVVSS 218
Query: 207 TRSPSVNDRNVVRSSTVEKL*TKQTSKT 290
+ SPS + + + SS++ TS +
Sbjct: 219 SSSPSSSSSSTLTSSSLSTSSIPSTSSS 246
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 102 TSEDINNRTTSEDINDRTISQKRPESTSSSDIIARTRSPSVNDRNV 239
TS D +N + ED+ + QKR ST + RS +R V
Sbjct: 37 TSVDEDNTSVFEDVEAQDSRQKRFSSTLEGNRFEELRSLREKEREV 82
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 96 ITTSEDINNRTTSEDINDRTISQKRPEST 182
+ +SEDI N+ S+ ++DR EST
Sbjct: 438 VDSSEDIINQIASQYMDDRAFETDEEEST 466
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Frame = +3
Query: 66 KHVHSGTHKYITTSEDINNRTTSEDINDRTISQ---KRPESTSSSDIIARTRSPSVN 227
K H H Y+ S+D+N S D D + K+ T S D I P ++
Sbjct: 746 KDKHKSLHVYLEKSKDVNAELRSLDTIDHLWTYFPFKKDLKTKSFDCIVIASQPKLS 802
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 108 EDINNRTTSEDINDRTISQKRPESTSSS 191
EDIN + ++DIN R P S +S
Sbjct: 111 EDINFQNDADDINQRFTYNNHPASVENS 138
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 8.1
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Frame = +3
Query: 6 TFSTQSETHTKQSHTEH-SSIKHVHSGTHKYITTSEDINNRTTSE----DINDRTISQKR 170
+F + HT +EH SS + H + ++SE ++ +SE +D + S R
Sbjct: 64 SFRSLRRGHTSGHASEHTSSSRSSHDESDSMSSSSESDSDSVSSESNPKSYSDSSTSSAR 123
Query: 171 PESTSSS 191
STS S
Sbjct: 124 SSSTSGS 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,287,238
Number of Sequences: 5004
Number of extensions: 46394
Number of successful extensions: 200
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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