Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30340X
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0173 - 14721369-14721503,14722542-14722629,14723580-147237...    31   0.89 
10_08_0418 - 17779499-17780952,17781177-17782017                       29   2.1  
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774...    29   2.7  
09_04_0569 + 18600750-18602117                                         28   4.8  
02_05_0365 - 28309587-28310132                                         28   4.8  
11_01_0150 + 1256029-1256137,1256206-1256247,1256345-1256455,125...    28   6.3  
02_05_0664 + 30717551-30719491                                         27   8.3  

>07_03_0173 -
           14721369-14721503,14722542-14722629,14723580-14723752,
           14727237-14727902
          Length = 353

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 251 NGRKIIN-KTDIQNVNNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKG 418
           NG  I N  T +QN N +  S      L  +K LRG K  T+TR +  ++   GD G
Sbjct: 246 NGTGINNLNTGMQNENGIDVSNHGATSLEEKKLLRGIKTATITR-ITYEVAVCGDNG 301


>10_08_0418 - 17779499-17780952,17781177-17782017
          Length = 764

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 39  QSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSSDII 200
           +SH  HS++   H      + T  D  + +   D++D  IS  RP   +S+  I
Sbjct: 397 RSHAVHSNLIATHPRIKLVVDTPRDYLDASGFADLDDLIISGNRPRMCTSTSFI 450


>04_04_1098 +
           30876785-30876835,30876846-30877171,30877396-30877418,
           30877687-30879392
          Length = 701

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +3

Query: 18  QSETHTKQSHTE--HSSIKHVHSGTHKYITTSE-DINNRTTSEDINDRTISQKRPESTS 185
           +S  H  +S +E  H + +   S  H   + S+ D   +TT    NDR   +KRP + S
Sbjct: 307 KSSRHDSESDSESDHKNARREKSSRHDSESDSDGDYGKKTTKHGKNDRDERKKRPATIS 365


>09_04_0569 + 18600750-18602117
          Length = 455

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 420 PPLSPSATRSTSTFLVTVTHLPP 352
           PP+SPSA+ STS+   + T  PP
Sbjct: 179 PPVSPSASTSTSSSSCSATSSPP 201


>02_05_0365 - 28309587-28310132
          Length = 181

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = +3

Query: 66  KHVHSGTHKYI----TTSEDINNRTTS--EDINDRTISQKRPESTSSSDIIARTRSPSVN 227
           K VH GT K I    T ++D+     S  +D   RTI +   E +  +D+ A +  P  N
Sbjct: 100 KVVHRGTSKVISVASTNAKDLRTTLPSLVDDNACRTIGRLIAERSMDADVFAMSYEPKKN 159

Query: 228 DR 233
           +R
Sbjct: 160 ER 161


>11_01_0150 +
           1256029-1256137,1256206-1256247,1256345-1256455,
           1256538-1256600,1256678-1256910,1256999-1257223,
           1257319-1257411,1257493-1257591,1257840-1257956
          Length = 363

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 24  ETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPEST 182
           +T+++       S+K    G +KYI+ S   N    S+D ++  ++ KR  ST
Sbjct: 28  QTNSRAPSDGSQSVKRSSCGKNKYISNSN--NGSHASDDAHNSILTAKRRRST 78


>02_05_0664 + 30717551-30719491
          Length = 646

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -3

Query: 226 FTLGDRVLAMISEDDVDSGRFCE--IVRSFISSDVVR 122
           FTLG  V A     D+DSGR     +VR  + +DV++
Sbjct: 363 FTLGSGVTACARLADIDSGRAFHGYLVRRLLDTDVIQ 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,340,179
Number of Sequences: 37544
Number of extensions: 286353
Number of successful extensions: 864
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)