Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30340X
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.52
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 31 0.91
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0) 30 1.2
SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_48553| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_23190| Best HMM Match : MHC_I_C (HMM E-Value=1.5) 29 2.1
SB_16660| Best HMM Match : TIP49 (HMM E-Value=1.1e-21) 29 2.1
SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 29 2.8
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13) 29 2.8
SB_56513| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_48213| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11) 29 3.7
SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_10660| Best HMM Match : RVP (HMM E-Value=6.5) 29 3.7
SB_50299| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25) 29 3.7
SB_29203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_29085| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 29 3.7
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 29 3.7
SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34) 28 4.9
SB_20104| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_47358| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-09) 28 4.9
SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_16949| Best HMM Match : DUF1174 (HMM E-Value=0.08) 28 4.9
SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25) 28 4.9
SB_45259| Best HMM Match : CH (HMM E-Value=0.00071) 28 6.4
SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_424| Best HMM Match : AT_hook (HMM E-Value=0.63) 28 6.4
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_26498| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_15185| Best HMM Match : Gemini_AL2 (HMM E-Value=8.5) 27 8.5
SB_5829| Best HMM Match : S4 (HMM E-Value=4.2) 27 8.5
SB_54911| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26) 27 8.5
SB_50834| Best HMM Match : GCR (HMM E-Value=2.5) 27 8.5
SB_44276| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_44138| Best HMM Match : RVT_1 (HMM E-Value=3.2e-26) 27 8.5
>SB_41266| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 660
Score = 31.5 bits (68), Expect = 0.52
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = +3
Query: 30 HTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSSDIIART 209
H++Q+ T + S T T E +NNR T E +N+R + + R
Sbjct: 184 HSQQTETPETQSTTETSETQSSTDTREPVNNRDTRETVNNRDTRDTVNNRDTRDPVNNRD 243
Query: 210 RSPSVNDRN 236
+N+R+
Sbjct: 244 TQDPINNRD 252
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = +3
Query: 12 STQSETHTKQSHTEHSSIKHVHSGTHKYIT---TSEDINNRTTSEDINDRTISQKRPEST 182
S Q+ET QS TE S + + T + + T E +NNR T + +N+R
Sbjct: 185 SQQTETPETQSTTETSETQS-STDTREPVNNRDTRETVNNRDTRDTVNNRDTRDPVNNRD 243
Query: 183 SSSDIIARTRSPSVNDRN 236
+ I R VN+R+
Sbjct: 244 TQDPINNRDTRDPVNNRD 261
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = +3
Query: 3 KTFSTQSETHTKQSHTEHSSIKHVHSGTHKYITTSED----INNRTTSEDINDRTISQKR 170
+T TQS T T++ + + V++ + + D +NNR T + IN+R
Sbjct: 198 ETSETQSSTDTREPVNNRDTRETVNNRDTRDTVNNRDTRDPVNNRDTQDPINNRDTRDPV 257
Query: 171 PESTSSSDIIARTRSPSVNDRNVVRSSTVEKL*TKQT 281
+ I R +VN+R+ TV T+ T
Sbjct: 258 NNRDTRDPINNRDTRDTVNNRDT--RDTVSNRDTRDT 292
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 30.7 bits (66), Expect = 0.91
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +3
Query: 21 SETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSSDII 200
+E++ +S E + +HV + H T ++ ++ + ND R EST +
Sbjct: 380 AESNDFRSEVEQAHNRHVSNVVHLVPTVNQTGKDKDKDAESNDFRSEDPRKESTLAPPRK 439
Query: 201 ARTRSPSVNDRNVVRSS 251
ART VND N+ S+
Sbjct: 440 ART---GVNDTNIGNSN 453
>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
Length = 1325
Score = 30.3 bits (65), Expect = 1.2
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Frame = +3
Query: 6 TFSTQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDIN----DRTISQKRP 173
++ST+ T T+ H ++I V + H Y + S I T +N R + +
Sbjct: 767 SYSTRIYTTTRVRHVNTTAIPRVSTPRHAYDSYSTRIYTTTRVRQVNTTAIPRVSTPRHA 826
Query: 174 ESTSSSDIIARTRSPSVNDRNVVRSSTVEKL 266
+ S+ I TR VN + R ST L
Sbjct: 827 YDSYSTRIYTTTRVRHVNTTAIPRVSTPRHL 857
>SB_44957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1336
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 437 PIQSPKDQPHG---QPSNFKQNGGQTIPPWSRVTRKLHRPVQMNHSVTA 574
P + P D HG PS F+ + Q + W +V+ K+ Q+ H++ A
Sbjct: 412 PYEPPDDHAHGIELDPSKFEVDVEQ-VSHWQKVSDKIESVSQLEHAIAA 459
>SB_48553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 29.5 bits (63), Expect = 2.1
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Frame = +3
Query: 42 SHTEHSSIKHVHSGTHK---YITTSEDINNRTTSEDINDRTISQKRPESTSSSDIIARTR 212
S T+ + H TH YI+T E N+ T N + + P+S SS A T
Sbjct: 50 SKTKEKEVFHDDYSTHASQDYISTQEHSANQATQPATNRTSAATSSPKSKRSS---AATS 106
Query: 213 SPSVNDRNVVRSSTVEK 263
SP + SS+ K
Sbjct: 107 SPKSERSSAATSSSTGK 123
>SB_23190| Best HMM Match : MHC_I_C (HMM E-Value=1.5)
Length = 182
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/83 (19%), Positives = 36/83 (43%)
Frame = +3
Query: 3 KTFSTQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPEST 182
++F + T+ ++S +HV++ + E +NN + + ++ R
Sbjct: 15 RSFQGKVPAFTRGDKPVNNSCEHVNNSCEPVNNSCEPVNNSCEHVNNSREPVNNSREPVN 74
Query: 183 SSSDIIARTRSPSVNDRNVVRSS 251
+S + + +R P N R V +S
Sbjct: 75 NSREPVNNSREPVNNSREPVNNS 97
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/66 (21%), Positives = 30/66 (45%)
Frame = +3
Query: 54 HSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSSDIIARTRSPSVNDR 233
++S +HV++ + E +NN + + ++ R +S + + +R P N R
Sbjct: 53 NNSCEHVNNSREPVNNSREPVNNSREPVNNSREPVNNSREPVNNSREPVNNSREPVNNSR 112
Query: 234 NVVRSS 251
V +S
Sbjct: 113 EPVNNS 118
>SB_16660| Best HMM Match : TIP49 (HMM E-Value=1.1e-21)
Length = 150
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 248 INGRKIINKTDIQNVNNVSTSVKMTILLITEK 343
INGR INK D++ +N + K + L+ E+
Sbjct: 113 INGRDTINKGDVEEINELFYDAKSSAKLLAEQ 144
>SB_22482| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 445 LNWTYVPWSSFVAISYKIYFYIPCNSNP 362
++W+Y WS + +++ YF+IP NP
Sbjct: 4 ISWSYREWSEKLNSTFERYFWIPEEPNP 31
>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 228 NGQSSPHEFHVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 287
Query: 473 PSNFKQN 493
+ +Q+
Sbjct: 288 AALLRQH 294
>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 1238
Score = 29.1 bits (62), Expect = 2.8
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 389 NGQSSPHEFLVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 448
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 449 AALLRQ 454
>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
Length = 351
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 113 YKQSHHVRRYKRSHNFTKTTRINIIFGYHC 202
YKQS H+RR++RSH + + +HC
Sbjct: 236 YKQSGHMRRHERSHEHGHSDKGKSDTRHHC 265
>SB_56513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 83 NGQSSPHEFHVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 142
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 143 AALLRQ 148
>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 402 NGQSSPHEFHVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 461
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 462 AALLRQ 467
>SB_48213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 83 NGQSSPHEFHVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 142
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 143 AALLRQ 148
>SB_30000| Best HMM Match : rve (HMM E-Value=2.4e-11)
Length = 880
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 262 NGQSSPHEFHVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 321
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 322 AALLRQ 327
>SB_27280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 980
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 286 NGQSSPHEFHVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 345
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 346 AALLRQ 351
>SB_10660| Best HMM Match : RVP (HMM E-Value=6.5)
Length = 304
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 87 NGQSSPHEFHVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 146
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 147 AALLRQ 152
>SB_50299| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
Length = 465
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 87 NGQSSPHEFHVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 146
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 147 AALLRQ 152
>SB_29203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 36 NGQSSPHEFHVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 95
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 96 AALLRQ 101
>SB_29085| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 408
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 83 NGQSSPHEFHVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 142
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 143 AALLRQ 148
>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 1329
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 389 NGQSSPHEFHVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 448
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 449 AALLRQ 454
>SB_4782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1286
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 328 NGQSSPHEFHVVNTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 387
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 388 AALLRQ 393
>SB_56787| Best HMM Match : Keratin_B2 (HMM E-Value=0.34)
Length = 527
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/80 (25%), Positives = 39/80 (48%)
Frame = +3
Query: 12 STQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSS 191
S +S T K + +S I+H +HKY+T + D ++ + + R+I+Q + +
Sbjct: 213 SQRSVTQVKDP-SHNSEIRHT---SHKYVTQARDPSHNSKIRHTSQRSITQFKDSRRDRN 268
Query: 192 DIIARTRSPSVNDRNVVRSS 251
I + +S R+V +S
Sbjct: 269 LKIYQYQSTLTTSRHVTITS 288
>SB_20104| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 289 VLDVCFVYNFSTVDDRTTLRSFTLGDRVL 203
++DVC+VY+ D TL SF + +R L
Sbjct: 321 LVDVCWVYDARLGDSTATLCSFEMAERAL 349
>SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 6 TFSTQSETHTKQSHTEHSSIKHVH-SGTHKYITTSEDINNRTTSEDINDRTISQKRPEST 182
T +T + +T + KH++ +K +D N+ T+ED ND+ + T
Sbjct: 29 TRTTNININENNDNTNDDNNKHINDDNDNKTNNNDKDTNDDNTNED-NDKNNNDDNNNKT 87
Query: 183 SSSDIIARTRSPSVNDRN 236
+ +D T ++ND N
Sbjct: 88 NDND----TNDENINDDN 101
>SB_47358| Best HMM Match : F5_F8_type_C (HMM E-Value=3.2e-09)
Length = 535
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 266 INKTDIQNVNNVSTSVKMTILLITEKKLRGGKWVTVTRN 382
I+ T+ + + S + + LI K +RG W+T+ RN
Sbjct: 395 IHPTEFEGAPSCSEPLGVESGLIPNKAMRGTSWITIDRN 433
>SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 689
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 68 TCSLWDP*IYHYVRGYKQSHHVRRYKRSHNFTK 166
TC + + +YHY+ + HH+ R H F K
Sbjct: 318 TCKVMEHIVYHYIYAHLDRHHILR-DFQHGFRK 349
>SB_16949| Best HMM Match : DUF1174 (HMM E-Value=0.08)
Length = 349
Score = 28.3 bits (60), Expect = 4.9
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +3
Query: 15 TQSETHTKQSHTEHSSIKHVHSGTHKY--ITTSEDINNRTTSEDI----NDRTISQKRP 173
T S S+ +SI HSG + I+TS N+RTTS I NDRT S P
Sbjct: 187 TNSTNIIHPSNDSTTSISITHSGNDRTTSISTSHPGNDRTTSISITHPSNDRTTSIASP 245
>SB_2280| Best HMM Match : RVT_1 (HMM E-Value=1.4e-25)
Length = 1186
Score = 28.3 bits (60), Expect = 4.9
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +2
Query: 293 NNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVADGDKGGPRNVRPIQSPKDQPHGQ 472
N S+ + ++ T + G T + V ++ D+ P +RP Q PKD P +
Sbjct: 328 NGQSSPHEFHVVDTTGPTILGLPTCTAMKLVTLNHSLSKDQAEPAEIRPAQVPKDDPEAK 387
Query: 473 PSNFKQ 490
+ +Q
Sbjct: 388 AALLRQ 393
>SB_45259| Best HMM Match : CH (HMM E-Value=0.00071)
Length = 1032
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/49 (26%), Positives = 27/49 (55%)
Frame = +2
Query: 260 KIINKTDIQNVNNVSTSVKMTILLITEKKLRGGKWVTVTRNVEVDLVAD 406
+++ TDI N V+ +++ + + +GG+ + RN+ V L+AD
Sbjct: 806 EVVGSTDITNGEEVAEHIRVLQDAVDQLN-QGGRRLDTLRNISVRLIAD 853
>SB_4442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 21 SETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPES-TSSSDI 197
S + + H++ + +S H + NN + + + ND T + P + T+ + +
Sbjct: 174 SSNNNNDQNNNHNNNNNNNSNNHNNHKNNNHNNNNSNNNNSNDHTATTTTPTAKTTPATV 233
Query: 198 IARTRSPSVNDRN 236
+ + S N+ N
Sbjct: 234 LVQQNINSSNNNN 246
>SB_424| Best HMM Match : AT_hook (HMM E-Value=0.63)
Length = 201
Score = 27.9 bits (59), Expect = 6.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 84 THKYITTSEDINNRTTSEDINDRTI 158
TH I + + +N TT ED+ND +
Sbjct: 88 THNNIMSKNEESNATTKEDVNDNAV 112
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 27.9 bits (59), Expect = 6.4
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +2
Query: 269 NKTDIQNVNNVSTSVKMTILLITEKKL---RGGKWVTVTRNVEVDLVADGDKGGPRNVRP 439
++ D+ + N S + +++ +IT+++ RG +VT E+D D G + RP
Sbjct: 21 SEADVLFLRNGSKFL-LSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRP 79
Query: 440 IQSPKDQPHGQPSNFKQNGG 499
++ K QP G+ GG
Sbjct: 80 MKVNKAQPRGERGGGGSQGG 99
>SB_26498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 410 DKGGPRNVRPIQSPKDQPHGQPSNFKQ 490
D+ P +RP Q PKD P + + +Q
Sbjct: 13 DQAEPAEIRPAQVPKDDPEAKAALLRQ 39
>SB_15185| Best HMM Match : Gemini_AL2 (HMM E-Value=8.5)
Length = 191
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 410 DKGGPRNVRPIQSPKDQPHGQPSNFKQ 490
D+ P +RP Q PKD P + + +Q
Sbjct: 13 DQAEPAKIRPAQVPKDDPEAKAALLRQ 39
>SB_5829| Best HMM Match : S4 (HMM E-Value=4.2)
Length = 893
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 99 TTSEDINN--RTTSEDINDRTISQKRPESTSS 188
TT INN +T +DI RTIS P +T S
Sbjct: 595 TTPHAINNLGNSTMDDITARTISPSEPTNTDS 626
>SB_54911| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
Length = 730
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 410 DKGGPRNVRPIQSPKDQPHGQPSNFKQ 490
D+ P +RP Q PKD P + + +Q
Sbjct: 13 DQAEPAEIRPAQVPKDDPEAKAALLRQ 39
>SB_50834| Best HMM Match : GCR (HMM E-Value=2.5)
Length = 909
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 434 RPIQSPKDQPHG-QPSNFKQNGGQTIPPWSRVTRKL 538
RP+ PK QP G +PSN Q+ T+ RKL
Sbjct: 295 RPLDKPKGQPQGSRPSNEVQSKDSTVMISKTKLRKL 330
>SB_44276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 410 DKGGPRNVRPIQSPKDQPHGQPSNFKQ 490
D+ P +RP Q PKD P + + +Q
Sbjct: 13 DQAEPAEIRPAQVPKDDPEAKAALLRQ 39
>SB_44138| Best HMM Match : RVT_1 (HMM E-Value=3.2e-26)
Length = 386
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 410 DKGGPRNVRPIQSPKDQPHGQPSNFKQ 490
D+ P +RP Q PKD P + + +Q
Sbjct: 13 DQAEPAEIRPAQVPKDDPEAKAALLRQ 39
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,043,541
Number of Sequences: 59808
Number of extensions: 350960
Number of successful extensions: 1377
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1338
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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