Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30340X
         (585 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.9  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   6.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.9  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 14/57 (24%), Positives = 25/57 (43%)
 Frame = +3

Query: 24  ETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSSD 194
           +T  K      + +  V  G  +     E+ +++   E  N+   SQK   ++SSSD
Sbjct: 55  KTFDKGPKNYTTPVNFVAGGIQQAGKPKEETDDKDDDESDNENIKSQKEFPNSSSSD 111


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 418 SFVAISYKIYFYIPC 374
           ++  +S  I FY+PC
Sbjct: 191 TYAVVSSSISFYVPC 205


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/59 (18%), Positives = 25/59 (42%)
 Frame = +3

Query: 33  TKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSSDIIART 209
           T Q ++ +S+I   ++ T+     + + NN   +   ND         + ++ D+   T
Sbjct: 218 TCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDMFCHT 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,765
Number of Sequences: 438
Number of extensions: 3273
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)