Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30340X
(585 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03230.1 68416.m00319 esterase/lipase/thioesterase family pro... 28 4.0
At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger) fa... 28 5.3
At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger) fa... 28 5.3
At1g73460.1 68414.m08504 protein kinase family protein contains ... 28 5.3
At5g11350.1 68418.m01325 endonuclease/exonuclease/phosphatase fa... 27 7.0
At4g22370.1 68417.m03233 hypothetical protein 27 7.0
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put... 27 7.0
At2g24460.1 68415.m02923 expressed protein 27 7.0
At2g04620.1 68415.m00470 cation efflux family protein potential ... 27 7.0
At2g03630.1 68415.m00323 hypothetical protein 27 7.0
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 27 9.2
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 27 9.2
>At3g03230.1 68416.m00319 esterase/lipase/thioesterase family
protein contains Interpro entry IPR000379
Length = 333
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 3 KTFSTQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDI 116
K T+ + + HT+HS IK Y+TT +DI
Sbjct: 215 KDTMTERDLELAEKHTKHSYIKESALRQGGYVTTQQDI 252
>At5g24870.2 68418.m02943 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 99 TTSEDINNRTTSEDINDRTISQKRPESTSSSDIIARTRSPSVNDRNVVRSST 254
++S N+T + + IS + + S+ PSV D +VV SST
Sbjct: 227 SSSSSRGNKTEGSVVGGKNISSPQGNGITMSEPRRNRNLPSVRDNSVVSSST 278
>At5g24870.1 68418.m02942 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 520
Score = 27.9 bits (59), Expect = 5.3
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 99 TTSEDINNRTTSEDINDRTISQKRPESTSSSDIIARTRSPSVNDRNVVRSST 254
++S N+T + + IS + + S+ PSV D +VV SST
Sbjct: 227 SSSSSRGNKTEGSVVGGKNISSPQGNGITMSEPRRNRNLPSVRDNSVVSSST 278
>At1g73460.1 68414.m08504 protein kinase family protein contains
protein kinase domain Pfam:PF00069
Length = 1169
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 9 FSTQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSS 188
FS S QS SS K + SG H+ +T + + S ++D + +R S SS
Sbjct: 689 FSFGSSQKDGQSMHAESS-KSLWSGNHETVTRDRNTERLSASTAMDDMVATWRRKSSDSS 747
Query: 189 S 191
S
Sbjct: 748 S 748
>At5g11350.1 68418.m01325 endonuclease/exonuclease/phosphatase
family protein contains Pfam profile PF03372:
Endonuclease/Exonuclease/phosphatase family
Length = 754
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 108 EDINNRTTSEDINDRTISQKRPESTSSS 191
+D N +T+ED++ TIS P+ SS+
Sbjct: 500 DDSGNLSTAEDLSSLTISDTEPQHASSA 527
>At4g22370.1 68417.m03233 hypothetical protein
Length = 205
Score = 27.5 bits (58), Expect = 7.0
Identities = 15/77 (19%), Positives = 34/77 (44%)
Frame = +3
Query: 12 STQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSS 191
ST + H SH+ S++KH E I+ + ++ ++ + + E +
Sbjct: 42 STNTSFHLDLSHSHRSTLKHYTRVRKSESDWEESIDEEKSDQEESEDEENDDKKEDYRAK 101
Query: 192 DIIARTRSPSVNDRNVV 242
+ I + + + DRN++
Sbjct: 102 ETILKLYT-DIKDRNIM 117
>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 786
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +3
Query: 78 SGTHKYITTSEDINNRTTSEDINDRTISQKRPESTSSSDIIARTRSPS 221
S + YITTS +INN T E S P++ S+ II PS
Sbjct: 121 SSSFSYITTSLNINNSDTFEIPKAALKSAATPKNASAPLIITWKPRPS 168
>At2g24460.1 68415.m02923 expressed protein
Length = 150
Score = 27.5 bits (58), Expect = 7.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 412 VAISYKIYFYIPCNSNPL 359
V ++ K+Y Y PCN++PL
Sbjct: 124 VKLTQKLYTYAPCNASPL 141
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 21 SETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSED 140
S++H + H EH H HS H+ + D +++ S +
Sbjct: 586 SDSHKHEEHHEHDHHHHSHSHKHEECNHNHDHEHQSHSHN 625
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 21 SETHTKQSHTEHSSIKHVHSGTHKY 95
+ +H+ QSH+ + H HS +HK+
Sbjct: 555 THSHSHQSHSHKNEEHHQHSDSHKH 579
>At2g03630.1 68415.m00323 hypothetical protein
Length = 252
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +3
Query: 15 TQSETHTKQSHTEHSSIKHVHSGTHKYITTSEDINNRTTSEDINDRTIS 161
T++ +SH+ SS S + Y++ +D+ E +ND IS
Sbjct: 42 TETVIINSESHSRLSSSSSSSSSSSSYLSPPKDLPEEVLKESLNDPEIS 90
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 361 LTASKFLFRYK*DRHLDRRTNIINVLDVCFVYNFSTVDDRTTLRSFT 221
L A KFL + RH+ + D+C + ++TTLR F+
Sbjct: 269 LRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIKEKTTLRRFS 315
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 27.1 bits (57), Expect = 9.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -3
Query: 361 LTASKFLFRYK*DRHLDRRTNIINVLDVCFVYNFSTVDDRTTLRSFT 221
L A KFL + RH+ + D+C + ++TTLR F+
Sbjct: 269 LRAVKFLGNPEERRHIREELLVAGKFDICVTSFEMAIKEKTTLRRFS 315
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,862,698
Number of Sequences: 28952
Number of extensions: 242178
Number of successful extensions: 763
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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