BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30339 (385 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu... 44 1e-05 SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 28 0.44 SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 27 0.76 SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 25 5.4 SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 25 5.4 SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 5.4 SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 24 7.1 SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha... 24 9.4 SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 24 9.4 SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 24 9.4 SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 9.4 SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 24 9.4 >SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit 7|Schizosaccharomyces pombe|chr 1|||Manual Length = 92 Score = 43.6 bits (98), Expect = 1e-05 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Frame = +2 Query: 71 KIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIY-EGVEREH- 244 K +G++TY +S +QR AG N+FRR VA PF I Y IY G ER Sbjct: 21 KQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIYCWGKERNEF 80 Query: 245 -HRLYGRTLL 271 + +GR L+ Sbjct: 81 LNSKHGRHLV 90 >SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamily|Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 28.3 bits (60), Expect = 0.44 Identities = 11/39 (28%), Positives = 20/39 (51%) Frame = +2 Query: 122 YAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVER 238 Y + G +++ ++ KVAP I YL+YE ++ Sbjct: 383 YKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKK 421 >SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosaccharomyces pombe|chr 3|||Manual Length = 1106 Score = 27.5 bits (58), Expect = 0.76 Identities = 17/50 (34%), Positives = 22/50 (44%) Frame = +2 Query: 107 HEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVEREHHRLY 256 H R Y SNG+ I F+ +FK A I L + + RE LY Sbjct: 345 HSTRTYVEQFSNGVTIISYNFKPELFKNAAVTSINEL-FSQITREASLLY 393 >SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Schizosaccharomyces pombe|chr 1|||Manual Length = 160 Score = 24.6 bits (51), Expect = 5.4 Identities = 15/61 (24%), Positives = 26/61 (42%) Frame = +2 Query: 50 KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEG 229 + G++ L TYK+ GA+ G+P+ + + V +G LIY+ Sbjct: 20 REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79 Query: 230 V 232 V Sbjct: 80 V 80 >SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Schizosaccharomyces pombe|chr 2|||Manual Length = 160 Score = 24.6 bits (51), Expect = 5.4 Identities = 15/61 (24%), Positives = 26/61 (42%) Frame = +2 Query: 50 KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEG 229 + G++ L TYK+ GA+ G+P+ + + V +G LIY+ Sbjct: 20 REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79 Query: 230 V 232 V Sbjct: 80 V 80 >SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pombe|chr 2|||Manual Length = 497 Score = 24.6 bits (51), Expect = 5.4 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +2 Query: 56 FGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIF 160 FG++ ++R + +K +AH A IS G+ N F Sbjct: 41 FGKVVQLRSFIPFKNAAHALE-NANDISEGVLNDF 74 >SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Schizosaccharomyces pombe|chr 1|||Manual Length = 611 Score = 24.2 bits (50), Expect = 7.1 Identities = 12/43 (27%), Positives = 20/43 (46%) Frame = +2 Query: 38 TTMGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRR 166 T GKHF ELA G ++ +Q+ + +G + +R Sbjct: 288 TVFGKHFQELANDYGDNLVVVNLLDQKGREAPLRSGFEKLCKR 330 >SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 338 Score = 23.8 bits (49), Expect = 9.4 Identities = 10/34 (29%), Positives = 18/34 (52%) Frame = +2 Query: 137 SNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVER 238 S G+ +FR F +F + + ++ YEG+ R Sbjct: 294 SEGLLGLFRGFGPRIFWTSSQSSLMFVFYEGIIR 327 >SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces pombe|chr 2|||Manual Length = 1112 Score = 23.8 bits (49), Expect = 9.4 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%) Frame = -2 Query: 171 RNLLKILGIPFEIAP--AYARCS 109 + LL++ G+P+ +AP A A+CS Sbjct: 761 QELLRLFGLPYIVAPQEAEAQCS 783 >SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr 3|||Manual Length = 1647 Score = 23.8 bits (49), Expect = 9.4 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +2 Query: 167 FRESVFKVAPPFIIGYLIYEGVEREHHRLYGRTLLILKMINKHS 298 F E + V + G + E LYG L IL + KH+ Sbjct: 1375 FMEGIHDVIVGLLKGIQCQQSDESIRENLYGSLLSILTVFQKHT 1418 >SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1273 Score = 23.8 bits (49), Expect = 9.4 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -1 Query: 304 LQTMFIDHFQNQQGSS 257 L ++ +DHFQN SS Sbjct: 940 LHSLIVDHFQNDSNSS 955 >SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces pombe|chr 3|||Manual Length = 669 Score = 23.8 bits (49), Expect = 9.4 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = -1 Query: 241 LPFNSFIYQVSNDEGR 194 L FNS+I V+ DEGR Sbjct: 304 LNFNSYIKPVAGDEGR 319 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,388,445 Number of Sequences: 5004 Number of extensions: 27014 Number of successful extensions: 75 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 75 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 126307516 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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