Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30339
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu...    44   1e-05
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    28   0.44 
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   0.76 
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...    25   5.4  
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...    25   5.4  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   5.4  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    24   7.1  
SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier homolog|Schizosaccha...    24   9.4  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    24   9.4  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    24   9.4  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    24   9.4  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    24   9.4  

>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
           7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 92

 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +2

Query: 71  KIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIY-EGVEREH- 244
           K +G++TY +S  +QR  AG       N+FRR       VA PF I Y IY  G ER   
Sbjct: 21  KQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIYCWGKERNEF 80

Query: 245 -HRLYGRTLL 271
            +  +GR L+
Sbjct: 81  LNSKHGRHLV 90


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 28.3 bits (60), Expect = 0.44
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 122 YAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVER 238
           Y    + G   +++    ++ KVAP   I YL+YE  ++
Sbjct: 383 YKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKK 421


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +2

Query: 107 HEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVEREHHRLY 256
           H  R Y    SNG+  I   F+  +FK A    I  L +  + RE   LY
Sbjct: 345 HSTRTYVEQFSNGVTIISYNFKPELFKNAAVTSINEL-FSQITREASLLY 393


>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +2

Query: 50  KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEG 229
           +  G++     L TYK+         GA+  G+P+ +   +  V        +G LIY+ 
Sbjct: 20  REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79

Query: 230 V 232
           V
Sbjct: 80  V 80


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +2

Query: 50  KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKVAPPFIIGYLIYEG 229
           +  G++     L TYK+         GA+  G+P+ +   +  V        +G LIY+ 
Sbjct: 20  REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79

Query: 230 V 232
           V
Sbjct: 80  V 80


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 56  FGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIF 160
           FG++ ++R  + +K +AH     A  IS G+ N F
Sbjct: 41  FGKVVQLRSFIPFKNAAHALE-NANDISEGVLNDF 74


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 38  TTMGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRR 166
           T  GKHF ELA   G     ++  +Q+     + +G   + +R
Sbjct: 288 TVFGKHFQELANDYGDNLVVVNLLDQKGREAPLRSGFEKLCKR 330


>SPCC1442.03 ||SPCC1450.19|ATP-Mg/Pi carrier
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 137 SNGIPNIFRRFRESVFKVAPPFIIGYLIYEGVER 238
           S G+  +FR F   +F  +    + ++ YEG+ R
Sbjct: 294 SEGLLGLFRGFGPRIFWTSSQSSLMFVFYEGIIR 327


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = -2

Query: 171 RNLLKILGIPFEIAP--AYARCS 109
           + LL++ G+P+ +AP  A A+CS
Sbjct: 761 QELLRLFGLPYIVAPQEAEAQCS 783


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 167  FRESVFKVAPPFIIGYLIYEGVEREHHRLYGRTLLILKMINKHS 298
            F E +  V    + G    +  E     LYG  L IL +  KH+
Sbjct: 1375 FMEGIHDVIVGLLKGIQCQQSDESIRENLYGSLLSILTVFQKHT 1418


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 304 LQTMFIDHFQNQQGSS 257
           L ++ +DHFQN   SS
Sbjct: 940 LHSLIVDHFQNDSNSS 955


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 241 LPFNSFIYQVSNDEGR 194
           L FNS+I  V+ DEGR
Sbjct: 304 LNFNSYIKPVAGDEGR 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,445
Number of Sequences: 5004
Number of extensions: 27014
Number of successful extensions: 75
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)