Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30339
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127...    30   0.72 
05_07_0042 - 27265687-27267159                                         29   1.3  
10_07_0045 + 12328388-12328419,12328504-12328645,12328862-123290...    29   1.7  
01_06_0624 - 30683249-30684631                                         28   2.9  
06_01_0779 - 5823389-5823787                                           27   5.1  
01_05_0225 - 19501643-19501903,19503974-19504477                       27   5.1  
12_02_0979 - 25009721-25009975,25010058-25010127,25010216-250103...    27   6.7  
01_05_0099 - 18098169-18098390,18098878-18098972,18099063-180991...    27   6.7  

>12_01_1041 -
           10711362-10711428,10711571-10712262,10712622-10712777,
           10712885-10713957,10714422-10714524,10714694-10714876,
           10715007-10715099,10715379-10715564,10716530-10716793
          Length = 938

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 193 GYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDKTPNFS 68
           G+F N L +     R+ + N+ SI SL    Y +G   P+F+
Sbjct: 310 GFFANTLKRHGRGERSDVGNNDSIESLLDPEYALGKDAPDFT 351


>05_07_0042 - 27265687-27267159
          Length = 490

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 165 LLKILGIPFEIAPAYARCSWADIL 94
           ++ ++ +PF + P YA+C W D L
Sbjct: 178 VMAMVELPFMVRPEYAQCLWGDTL 201


>10_07_0045 +
           12328388-12328419,12328504-12328645,12328862-12329054,
           12329224-12329320,12329404-12329528,12329616-12329734,
           12331225-12331298,12331359-12331413,12331450-12331500,
           12331611-12331857,12331940-12332036,12332170-12332244,
           12334286-12334488,12334757-12334905,12334995-12335168,
           12335276-12335401,12335493-12335623,12335743-12335818,
           12335898-12336027,12336115-12336193,12336267-12336465,
           12336591-12336698,12336769-12337025,12337267-12337282
          Length = 984

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +2

Query: 203 IIGYLIYEGVEREHHRLYGRTL 268
           ++G LIY G E  HH+LYG++L
Sbjct: 380 VVGVLIYVG-EIHHHQLYGQSL 400


>01_06_0624 - 30683249-30684631
          Length = 460

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 243 CSLSTPSYIKYPMMKGGATLKTLSRNLLKILGI 145
           C+ +  SY+  P+M+   +   + R+LL+I G+
Sbjct: 121 CASALASYLHIPVMRSAVSFGQMGRSLLRIPGV 153


>06_01_0779 - 5823389-5823787
          Length = 132

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 156 ILGIPFEIAPAYARCSWADIL*VTRPRILASSP 58
           +LGIP       +RC W     VT PR++ S+P
Sbjct: 67  VLGIP--ATTTASRCCWTSWWIVTAPRMMLSAP 97


>01_05_0225 - 19501643-19501903,19503974-19504477
          Length = 254

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 250 SVMLPFNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI 140
           S +LP+   +  VSN+E +      + KSS+D R +I
Sbjct: 158 SPLLPWRDSLVMVSNEEYKSVEHRVVIKSSQDARVSI 194


>12_02_0979 -
           25009721-25009975,25010058-25010127,25010216-25010381,
           25010501-25010651,25010843-25010890,25011172-25011225,
           25011400-25011513,25012666-25012782,25012899-25012991,
           25013085-25013123,25013990-25014055
          Length = 390

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 89  TYKISAHEQRAYAGAISNGIPNIFRRFRESVFKV 190
           TYK+SAH +  Y    +     I RRF+   F+V
Sbjct: 323 TYKLSAHLRHNYLTVFTIAALEILRRFQWVFFRV 356


>01_05_0099 -
           18098169-18098390,18098878-18098972,18099063-18099131,
           18099277-18099352,18101412-18101524,18104137-18104185,
           18104540-18104572,18105446-18105552,18106892-18106990,
           18107122-18107203
          Length = 314

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 143 GIPNIFRRFRESVFKVAPPFIIGYLIYEGVEREHHRL 253
           GIP  +R    ++ +  P  +I +  YE + R  H+L
Sbjct: 275 GIPGFYRGCATNLLRTTPNAVITFTSYEMINRLMHQL 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,331,221
Number of Sequences: 37544
Number of extensions: 153085
Number of successful extensions: 309
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)