Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30339
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)                       28   2.3  
SB_47383| Best HMM Match : LON (HMM E-Value=1.3)                       28   3.0  
SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_32937| Best HMM Match : MFS_1 (HMM E-Value=5e-35)                   27   5.2  
SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)                      27   6.9  
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0)             26   9.2  

>SB_948| Best HMM Match : Sec62 (HMM E-Value=9.5)
          Length = 306

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 223 IYQVSNDEGRGYFKNALTKSSEDIRNT 143
           +Y+ +ND G  YFK+   +++ D R +
Sbjct: 55  VYRAANDNGESYFKSIFKRAANDNRES 81



 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 235 FNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSI 122
           F S   + +ND G  YFK+   +++ D R +   SS +
Sbjct: 17  FRSIFDRAANDNGESYFKSIFKRAANDNRESNFKSSVV 54


>SB_47383| Best HMM Match : LON (HMM E-Value=1.3)
          Length = 1528

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 267  RVLPYSL*CSLSTPSYIKYPMMKGGATLKTLSRNLLKILG 148
            RV+  ++ C LS  S  K P+      LK  SR  LKI+G
Sbjct: 1013 RVIKQAIRCKLSITSSKKLPINTASNILKYFSRFPLKIIG 1052


>SB_29518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 235 FNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSI 122
           F S   + +ND G  YFK+   +++ D R +   SS +
Sbjct: 166 FRSIFDRAANDNGESYFKSIFKRAANDNRESNFKSSVV 203


>SB_32937| Best HMM Match : MFS_1 (HMM E-Value=5e-35)
          Length = 482

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -1

Query: 226 FIYQVSNDEGRGYF--KNALTKSSEDIRNT 143
           F Y + + EG+G+F  K+ L +S + I+NT
Sbjct: 397 FFYGIYDSEGKGFFCRKSCLEESKQVIQNT 426


>SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1287

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 215 LIYEGVEREHHRLYGRTLLILKMINKHSLQIK 310
           L+   +   H RLYGR+ ++L++ N   L+I+
Sbjct: 730 LLVSNITTLHERLYGRSRIVLRVRNIAPLRIR 761


>SB_12740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1306

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = -1

Query: 289  IDHFQNQQGSSV*SVMLPFNSFIYQVSNDEGRGYFKNALTKSSE 158
            +D F++ +  +   ++L +N+    ++ DEG  +F+N L  +SE
Sbjct: 878  VDPFEDDETLTDDYIVLSYNTECVHLAIDEGPRFFQNKLAVNSE 921


>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
          Length = 2442

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 229  SFIYQVSNDEGRGYFKNALTKSS 161
            +F+Y++S   G  YFKN L  SS
Sbjct: 974  TFLYKLSRSSGLEYFKNILLVSS 996


>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 140 NGIPNIFRRFRESVFKVAPPFIIGYLIYEGV 232
           +G   ++R    +  KVAP   I Y++YE +
Sbjct: 381 DGFKGLYRGLAPNFLKVAPAVSISYVVYENL 411


>SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0)
          Length = 876

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 200 FIIGYLIYEGVEREHHRLYGRTLLILKMINKHSLQ 304
           FI  +  Y+GV  +++ L+   + ILKM +K  L+
Sbjct: 669 FIKRFKKYKGVTMKNNALFANRIAILKMAHKRMLK 703


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,635,598
Number of Sequences: 59808
Number of extensions: 174070
Number of successful extensions: 356
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)