Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30339
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical pr...    42   2e-04
U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical pr...    41   3e-04
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    29   1.5  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    29   1.5  
Z32679-3|CAA83596.1|  401|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U64600-4|AAK39201.1|  299|Caenorhabditis elegans C.elegans homeo...    27   3.4  
U41532-2|AAV28353.1|  292|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AF016435-3|AAB65879.1|  438|Caenorhabditis elegans Hypothetical ...    27   6.0  

>Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical
           protein F45H10.2 protein.
          Length = 90

 Score = 41.5 bits (93), Expect = 2e-04
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +2

Query: 41  TMGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVAPPFIIGYL 217
           +MGKHFG L K+ G   + ++ +EQ+AY G         F+ +  +  +   P  I  YL
Sbjct: 7   SMGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVKTFKTYVWDQWYYYIPQTIGAYL 66

Query: 218 IYEGVER 238
           +Y+  ++
Sbjct: 67  LYDWAKK 73



 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = +1

Query: 256 RKNPADFENDQ 288
           RKNPADF NDQ
Sbjct: 80  RKNPADFANDQ 90


>U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical
           protein R07E4.3 protein.
          Length = 90

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
 Frame = +2

Query: 44  MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRF-RESVFKVAPPFIIGYLI 220
           MGKHFG L K+ G   + ++ +EQ+AY G         F+ +  +  +   P  I  YL+
Sbjct: 8   MGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVRTFKTYVWDQWYYYIPQTIGAYLL 67

Query: 221 YEGVER 238
           Y+  ++
Sbjct: 68  YDWAKK 73


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 222 YIKYPMMKGGATLKTLSRNLLKIL-GIPFEI 133
           YI Y  +KG   +K L++NL K+L G+P  I
Sbjct: 773 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 803


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 222 YIKYPMMKGGATLKTLSRNLLKIL-GIPFEI 133
           YI Y  +KG   +K L++NL K+L G+P  I
Sbjct: 893 YIHYKEVKGARGVKVLAKNLEKVLAGLPIYI 923


>Z32679-3|CAA83596.1|  401|Caenorhabditis elegans Hypothetical
           protein C05B5.3 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 277 QNQQGSSV*SVMLPFNSFIYQVSNDEGRGYFKNALTKSSEDIRNT 143
           QNQQ S    V  P + F  Q ++++  G+F N   ++ ++  N+
Sbjct: 190 QNQQNSQQNQVNGPTSGFSNQQTSNQNSGFFNNQNQQNGQNFGNS 234


>U64600-4|AAK39201.1|  299|Caenorhabditis elegans C.elegans homeobox
           protein 30 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +3

Query: 12  LQNLEVRSSPLWANTLEN*LKFGVLSPTRYLPMN 113
           +QNL +RSSP WAN +   L  G   P   LPM+
Sbjct: 232 VQNL-IRSSPYWANYITA-LPMGTQLPMMGLPMS 263


>U41532-2|AAV28353.1|  292|Caenorhabditis elegans Hypothetical
           protein F11D5.7 protein.
          Length = 292

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/35 (37%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
 Frame = -1

Query: 334 KLISTLNNFNLQTMFIDHF---QNQQGSSV*SVML 239
           K++STLNN+N++  F++      NQ G+++ S++L
Sbjct: 64  KILSTLNNYNVRLSFVNSIITTSNQVGNAL-SILL 97


>AF016435-3|AAB65879.1|  438|Caenorhabditis elegans Hypothetical
           protein F59D6.4 protein.
          Length = 438

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -1

Query: 226 FIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDKTPNFS*FSKVFA 47
           ++ + S  E  G  +N   K  E I  +  N  + CS+  G   + +KTP+ S  S +  
Sbjct: 84  YLSEYSKIEVSGNLENCGCKGGE-IEISTKNQFANCSVLYGGLQIFNKTPDLSALSNIEI 142

Query: 46  HSGEL 32
             GE+
Sbjct: 143 IKGEI 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,458,526
Number of Sequences: 27780
Number of extensions: 143507
Number of successful extensions: 335
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)