Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30339
         (385 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10440.1 68418.m01210 cyclin family protein similar to cyclin...    28   1.9  
At5g61810.1 68418.m07756 mitochondrial substrate carrier family ...    28   2.5  
At2g35070.1 68415.m04302 expressed protein                             27   3.3  
At2g32760.1 68415.m04008 expressed protein                             27   3.3  
At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 fam...    27   4.3  
At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K) ne...    27   5.7  
At5g35230.1 68418.m04177 hypothetical protein                          27   5.7  
At2g35090.1 68415.m04305 hypothetical protein                          27   5.7  
At4g23510.1 68417.m03388 disease resistance protein (TIR class),...    26   7.5  
At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal hydrolase-r...    26   9.9  
At3g47470.1 68416.m05162 chlorophyll A-B binding protein 4, chlo...    26   9.9  

>At5g10440.1 68418.m01210 cyclin family protein similar to cyclin
           D2.1 protein [Nicotiana tabacum] GI:4160298; contains
           Pfam profile PF00134: Cyclin, N-terminal domain
          Length = 298

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 111 NNEHMLELFQMVFLISSEDFVRAFLK*PRPSSLDT*YMKELKGSITDY 254
           N+     +FQM F + SE+ VR  ++  R  S    Y+K L+    D+
Sbjct: 19  NSVDTRSIFQMGFPLESEEIVREMIEKERQHSPRDDYLKRLRNGDLDF 66


>At5g61810.1 68418.m07756 mitochondrial substrate carrier family
           protein similar to peroxisomal Ca-dependent solute
           carrier, Oryctolagus cuniculus,GI:2352427; contains
           INTERPRO:IPR001993 Mitochondrial substrate carrier
           family, INTERPRO:IPR002048 calcium-binding EF-hand
           domain
          Length = 478

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 143 GIPNIFRRFRESVFKVAPPFIIGYLIYEGVER 238
           G+   +R    + FKV P   I YL+YE +++
Sbjct: 442 GLKGFYRGIFPNFFKVIPSASISYLVYEAMKK 473


>At2g35070.1 68415.m04302 expressed protein
          Length = 158

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/47 (21%), Positives = 23/47 (48%)
 Frame = +2

Query: 47  GKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFK 187
           G H  +L  ++ L    + + +  A  GAI++G  ++  + +  + K
Sbjct: 25  GNHVDKLGMVKALEAINVPSTQAEALTGAITSGFESVMGKVKADIAK 71


>At2g32760.1 68415.m04008 expressed protein
          Length = 352

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -2

Query: 198 GGATL--KTLSRNLLKILGIPFEIAP 127
           GG+ L  K LS+  ++ILG+PF +AP
Sbjct: 187 GGSRLGTKPLSQGSVRILGLPFSMAP 212


>At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mustela vison]
           GI:6093316; contains Pfam profile PF03124: EXS family
          Length = 424

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 74  IRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRESVFKV 190
           +R   TYK+SAH +  Y          I+RRF+ + F++
Sbjct: 344 LRWTWTYKLSAHLRNNYITVFIITALEIYRRFQWAFFRI 382


>At5g64070.1 68418.m08046 phosphatidylinositol 4-kinase (PI4K)
           nearly identical to gi:4467359
          Length = 1121

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 205 DEGRGYFKNALTKSSEDIRNTI*NSSSICSLFMGRYLVGDKTPNFS*FSKVF 50
           DE  G+FK    + S+D ++       I  +  G    GD++P FS F ++F
Sbjct: 420 DEREGFFKKFFKEKSDDKKD-------IVKVDDGNESEGDESPEFSLFKRLF 464


>At5g35230.1 68418.m04177 hypothetical protein 
          Length = 366

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = -1

Query: 328 ISTLNNFNLQTMFIDHFQNQQGSSV*SVMLPFNSFI-YQVSNDEGRGYFKNALTKSSEDI 152
           +S   +  ++TM  +  + Q   ++ S M+P NS++ Y +  D G       L+K+S+ +
Sbjct: 278 LSVAISSGMETMQYEELKTQYEKTLRSCMIPSNSYLQYTLIRDGGNLEHLLTLSKNSQTL 337

Query: 151 RNTI*NSSSI 122
              +  S S+
Sbjct: 338 LCKVCGSPSL 347


>At2g35090.1 68415.m04305 hypothetical protein
          Length = 124

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +2

Query: 47  GKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNIFRRFRES 178
           G H  +L  ++ L    + + +  A  GAI++G+ ++  +  +S
Sbjct: 25  GNHVDKLGMVKALEAINVPSTQAEALTGAITSGLESVVEKEYQS 68


>At4g23510.1 68417.m03388 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 635

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -1

Query: 244 MLPFNSFIYQVSNDEGR---GYFKNALTKSSEDIRNTI*NSS 128
           ++PF  F Y+V  +  +   G+F+N L K+ ED+R  +  S+
Sbjct: 96  IVPFPIF-YKVKAESVKNQTGHFRNVLLKTEEDVRKKVDRSN 136


>At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1149

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 229 SFIYQVSNDEGRGYFKNALTKSSEDIRNTI*NSSSIC 119
           SF+  V N EGR  F+  LT +  D + T     S C
Sbjct: 215 SFVEGVHNREGRDVFEKVLTSAKADRKWTFWMCRSKC 251


>At3g47470.1 68416.m05162 chlorophyll A-B binding protein 4,
           chloroplast / LHCI type III CAB-4 (CAB4) identical to
           SP|P27521 Chlorophyll A-B binding protein 4, chloroplast
           precursor (LHCI type III CAB-4) (LHCP) {Arabidopsis
           thaliana}
          Length = 251

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 244 MLPFNSFIYQVSNDEGRGYFKNALTKSSEDIRNTI 140
           ML F  F+ Q  N  G+G F+N L   S+   NTI
Sbjct: 213 MLAFLGFVVQ-HNVTGKGPFENLLQHLSDPWHNTI 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,970,697
Number of Sequences: 28952
Number of extensions: 131515
Number of successful extensions: 275
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)