Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30335
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    92   5e-20
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    90   1e-19
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   6.3  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    25   8.3  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 91.9 bits (218), Expect = 5e-20
 Identities = 44/84 (52%), Positives = 49/84 (58%)
 Frame = +3

Query: 9   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 188
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 189 FHFRKNKNFCPVLNLDKLWTLVLN 260
           FH  KN  + P +NLD+LWTLV N
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLVPN 84



 Score = 27.9 bits (59), Expect = 0.89
 Identities = 17/66 (25%), Positives = 23/66 (34%)
 Frame = +2

Query: 254 PEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGG 433
           P +TR KY        PVIN++++           P  PVI+                GG
Sbjct: 83  PNETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIKQAGG 142

Query: 434 ACVLSA 451
              L A
Sbjct: 143 VVELIA 148


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 90.2 bits (214), Expect = 1e-19
 Identities = 43/84 (51%), Positives = 49/84 (58%)
 Frame = +3

Query: 9   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 188
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 189 FHFRKNKNFCPVLNLDKLWTLVLN 260
           FH  KN  + P +NLD+LWTL+ N
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLLPN 84



 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/66 (25%), Positives = 23/66 (34%)
 Frame = +2

Query: 254 PEQTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGG 433
           P + R KY        PVIN++++           P+ PVIV                GG
Sbjct: 83  PNEARDKYLGKNTEVAPVINVLQSGYGKVLGKGRLPETPVIVQTRYVSRRAEEKIKQAGG 142

Query: 434 ACVLSA 451
              L A
Sbjct: 143 VVELIA 148


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 327 PALTILMTGTLPSGADAYFSLVCSGLMS 244
           P +++LM+G  PS  + Y ++V + LMS
Sbjct: 786 PDISLLMSGIGPSSDEYYPTVVITALMS 813


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 319 DNIDDGDLAIWSRCILQPRL 260
           DN+D+ DLA +S+ I +P L
Sbjct: 2   DNLDEDDLAFFSKPIKKPPL 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,557
Number of Sequences: 5004
Number of extensions: 34344
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)