Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30334X
(376 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 143 8e-34
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 140 6e-33
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 133 9e-31
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 128 4e-29
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 118 3e-26
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 112 2e-24
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 108 4e-23
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 95 3e-19
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 95 5e-19
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 86 2e-16
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 82 3e-15
UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo sapiens... 80 2e-14
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 79 3e-14
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 70 2e-11
UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1; Encephal... 55 4e-07
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 54 1e-06
UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella... 42 0.004
UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n... 40 0.015
UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2; Methano... 38 0.045
UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1; ... 38 0.079
UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1; Thermoc... 38 0.079
UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 37 0.10
UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n... 36 0.18
UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1; Nanoarc... 36 0.24
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 35 0.56
UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4; Archaea... 35 0.56
UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6; Halobac... 34 0.74
UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7; Euryarc... 33 2.3
UniRef50_Q7VKW9 Cluster: Possible uroporphyrinogen III synthase;... 32 3.0
UniRef50_A1SN07 Cluster: ATP-dependent helicase HrpA; n=4; Actin... 32 3.0
UniRef50_Q2H5M1 Cluster: Putative uncharacterized protein; n=1; ... 32 3.9
UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus ... 32 3.9
UniRef50_Q7RXT7 Cluster: Putative uncharacterized protein NCU004... 31 5.2
UniRef50_A4HE40 Cluster: Putative uncharacterized protein; n=1; ... 31 6.9
UniRef50_Q93L33 Cluster: PssU; n=1; Rhizobium leguminosarum bv. ... 31 9.1
UniRef50_Q1EY35 Cluster: Major facilitator superfamily MFS_1 pre... 31 9.1
UniRef50_A7IHI7 Cluster: Putative uncharacterized protein; n=1; ... 31 9.1
UniRef50_A5E6S5 Cluster: Putative uncharacterized protein; n=1; ... 31 9.1
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 143 bits (347), Expect = 8e-34
Identities = 65/79 (82%), Positives = 71/79 (89%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
MKLNVSYPATGCQKLFEVVDEHKLR+FYEKRMG VEAD LGDEWKGY LR+A GNDKQG
Sbjct: 1 MKLNVSYPATGCQKLFEVVDEHKLRVFYEKRMGQVVEADILGDEWKGYQLRIAGGNDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQM 260
FPMK GVLT+ R+RLL ++
Sbjct: 61 FPMKQGVLTHGRLRLLKKI 79
Score = 34.7 bits (76), Expect = 0.56
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 263 HSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRK 370
HSC+ P + RK K+ R V+AN+S L LV+++K
Sbjct: 80 HSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 115
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 140 bits (340), Expect = 6e-33
Identities = 69/116 (59%), Positives = 82/116 (70%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
MKLNVS+PATG QK FEV+D+HKLR FY+KRMGAE+ AD LGDEWKGYV ++A GNDKQG
Sbjct: 1 MKLNVSFPATGAQKTFEVMDDHKLRHFYDKRMGAEITADHLGDEWKGYVFKIAGGNDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQMATHVTYRSAMERENVNHFVDVLLTPISRSWLLLLCAK 371
FPMK GVLTN+RVRLL++ H YR E V + + S L L+ K
Sbjct: 61 FPMKQGVLTNTRVRLLLKKG-HSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVK 115
Score = 66.9 bits (156), Expect = 1e-10
Identities = 29/38 (76%), Positives = 32/38 (84%)
Frame = +2
Query: 260 GHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKG 373
GHSCY P R GERKRKS RGCIVD NLS LAL++V+KG
Sbjct: 80 GHSCYRPRRTGERKRKSVRGCIVDQNLSALALIVVKKG 117
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 133 bits (322), Expect = 9e-31
Identities = 67/116 (57%), Positives = 78/116 (67%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWKGYV+R++ GNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQMATHVTYRSAMERENVNHFVDVLLTPISRSWLLLLCAK 371
FPMK GVLT+ RVRLL+ H YR E V + + S L L+ K
Sbjct: 61 FPMKQGVLTHGRVRLLLSKG-HSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVK 115
Score = 69.3 bits (162), Expect = 2e-11
Identities = 32/40 (80%), Positives = 34/40 (85%)
Frame = +2
Query: 254 ANGHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKG 373
+ GHSCY P R GERKRKS RGCIVDANLSVL LVIV+KG
Sbjct: 78 SKGHSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKG 117
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 128 bits (308), Expect = 4e-29
Identities = 62/116 (53%), Positives = 73/116 (62%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
MKLN+SYP TGCQKL E+ DE K+R FY+KRM EV + LGDEWKGYV R+ GNDKQG
Sbjct: 1 MKLNISYPVTGCQKLIEIEDERKVRSFYDKRMAMEVSGECLGDEWKGYVFRITGGNDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQMATHVTYRSAMERENVNHFVDVLLTPISRSWLLLLCAK 371
FPMK G++TN RVRLL+ H YR E V + S L L+ K
Sbjct: 61 FPMKQGIMTNGRVRLLLSKG-HSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVK 115
Score = 66.9 bits (156), Expect = 1e-10
Identities = 30/40 (75%), Positives = 34/40 (85%)
Frame = +2
Query: 254 ANGHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKG 373
+ GHSCY P R GERKRKS RGCIVD+ LSVL+LVIV+KG
Sbjct: 78 SKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKG 117
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 118 bits (285), Expect = 3e-26
Identities = 51/78 (65%), Positives = 63/78 (80%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
MKLN+S+PATGCQKL E DE K R FYEK M +EV AD LG+EWKGY++R++ GNDKQG
Sbjct: 1 MKLNISFPATGCQKLIEADDERKPRTFYEKHMASEVAADALGEEWKGYMVRISGGNDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQ 257
FPMK VLT+ R+ LL++
Sbjct: 61 FPMKQDVLTHDRIHLLLR 78
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 112 bits (269), Expect = 2e-24
Identities = 52/92 (56%), Positives = 65/92 (70%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
MK N+SYP TG QK E+ D+ K IF++KRMG VEAD LG+E+KGYVL++ GNDKQG
Sbjct: 1 MKFNISYPLTGAQKTVEIDDDKKCSIFFDKRMGQVVEADNLGEEYKGYVLKITGGNDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQMATHVTYRSAMERE 299
FPM+ GVL RVR+LM+ H YR + E
Sbjct: 61 FPMRQGVLFKGRVRILMRKG-HKGYRPRKDGE 91
Score = 53.6 bits (123), Expect = 1e-06
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +2
Query: 260 GHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKGA 376
GH Y P +DGE KRKS RGCIV ++ VLAL +V+KGA
Sbjct: 80 GHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGA 118
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 108 bits (259), Expect = 4e-23
Identities = 47/77 (61%), Positives = 57/77 (74%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
MK N+SYP TG QK E+ D+ K IF +K+MG EVE D LGDE+KGYV ++A GNDK G
Sbjct: 1 MKFNISYPLTGAQKCIEIDDDKKCNIFMDKKMGQEVEGDTLGDEFKGYVFKIAGGNDKDG 60
Query: 204 FPMKHGVLTNSRVRLLM 254
FPMK GV+ RVRLL+
Sbjct: 61 FPMKQGVMVRGRVRLLL 77
Score = 52.8 bits (121), Expect = 2e-06
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = +2
Query: 254 ANGHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKG 373
+ GHSC+ R G RKRKS RGCIV ++ VLAL IV+KG
Sbjct: 78 SEGHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIVKKG 117
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 95.5 bits (227), Expect = 3e-19
Identities = 45/78 (57%), Positives = 54/78 (69%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
MKLN+S P QK E+ DE KL F EKR+G V D +G+E+ GYV R+ GNDKQG
Sbjct: 42 MKLNISNPLNNVQKSIEIDDEKKLLPFMEKRIGNVVPGDSIGEEFLGYVFRITGGNDKQG 101
Query: 204 FPMKHGVLTNSRVRLLMQ 257
FPM GVLTN+RVRLL +
Sbjct: 102 FPMMQGVLTNNRVRLLFK 119
Score = 48.8 bits (111), Expect = 3e-05
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +2
Query: 260 GHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKG 373
G CY P + GE++RKS RGCIV +LS L L +V+KG
Sbjct: 121 GMKCYRPRKKGEKRRKSVRGCIVGQDLSALNLTLVKKG 158
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 94.7 bits (225), Expect = 5e-19
Identities = 43/76 (56%), Positives = 56/76 (73%)
Frame = +3
Query: 27 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQGF 206
K+NV+YPATG K F+ +E R F +KR+G EV+A LGDE+KGY+L++ G DK GF
Sbjct: 1 KINVAYPATGRIKKFDFEEEKNYRPFLDKRIGQEVDASSLGDEFKGYILKITGGCDKDGF 60
Query: 207 PMKHGVLTNSRVRLLM 254
PM GV TN+RVRLL+
Sbjct: 61 PMMTGVATNNRVRLLL 76
Score = 48.8 bits (111), Expect = 3e-05
Identities = 20/37 (54%), Positives = 29/37 (78%)
Frame = +2
Query: 263 HSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKG 373
+ CY PLR+GER+RK+ RG IV ++SVL ++V+KG
Sbjct: 80 NGCYKPLRNGERRRKTVRGAIVAGDISVLNTIVVKKG 116
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 86.2 bits (204), Expect = 2e-16
Identities = 35/78 (44%), Positives = 55/78 (70%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
M++ ++YP G Q + ++ D L YEKR+G ++E ++LG ++KGY+ R+ G DKQG
Sbjct: 1 MRITLAYPENGTQVVVDIDDPAALNALYEKRVGQDIEGEKLGGQFKGYLFRIGGGFDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQ 257
FPMK GV+T R+RLL++
Sbjct: 61 FPMKQGVITPRRIRLLLK 78
Score = 51.2 bits (117), Expect = 6e-06
Identities = 21/38 (55%), Positives = 28/38 (73%)
Frame = +2
Query: 260 GHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKG 373
G SCY P +DGERKRK+ RGCI+ +S L V+++KG
Sbjct: 80 GASCYRPRKDGERKRKTVRGCIISDEISALHCVVLQKG 117
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 82.2 bits (194), Expect = 3e-15
Identities = 34/78 (43%), Positives = 53/78 (67%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
MK N++ P+TG Q E+ DE KLRI Y K++ ++++ +G EW + + G DKQG
Sbjct: 1 MKFNIANPSTGVQHTIEIDDEDKLRILYGKKLTSKIDGKIIGKEWDKSIFIITGGQDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQ 257
FPMK G+L+ SRV++L++
Sbjct: 61 FPMKEGILSPSRVKILLK 78
Score = 32.7 bits (71), Expect = 2.3
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +2
Query: 281 LRDGERKRKSFRGCIVDANLSVLALVIV 364
++ GER RKS RGCIV +SVL + ++
Sbjct: 89 MKKGERCRKSVRGCIVSPEISVLNIKLL 116
>UniRef50_A2A3R7 Cluster: Ribosomal protein S6; n=1; Homo
sapiens|Rep: Ribosomal protein S6 - Homo sapiens (Human)
Length = 91
Score = 79.8 bits (188), Expect = 2e-14
Identities = 35/46 (76%), Positives = 38/46 (82%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWK 161
MKLN+S+PATGCQKL EV DE KLR FYEKRM EV AD LG+EWK
Sbjct: 1 MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWK 46
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 78.6 bits (185), Expect = 3e-14
Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 6/100 (6%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRI-FYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQ 200
MKLN++YP G K FE+ DE R+ + R+G EV+ G E+KGY+ R+ G+DK
Sbjct: 1 MKLNIAYPRNGTVKQFEISDEVLRRVQLQDYRLGNEVDGAIFGSEFKGYIFRLRGGSDKD 60
Query: 201 GFPMKHGVLTNSRVRLLMQMA-----THVTYRSAMERENV 305
GFPM GVL +SRV LL++ T Y+ R+NV
Sbjct: 61 GFPMVPGVLASSRVSLLVKRGAIGFNTFRGYQGERRRKNV 100
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 69.7 bits (163), Expect = 2e-11
Identities = 32/77 (41%), Positives = 45/77 (58%)
Frame = +3
Query: 27 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQGF 206
K+N+S P TG K + D K + + RM +E + LG+E+ G R+ GND QGF
Sbjct: 8 KVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGF 67
Query: 207 PMKHGVLTNSRVRLLMQ 257
PM GVL + R RLL++
Sbjct: 68 PMYQGVLKSQRARLLLR 84
Score = 47.6 bits (108), Expect = 7e-05
Identities = 21/38 (55%), Positives = 27/38 (71%)
Frame = +2
Query: 260 GHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKG 373
G CY+ R+GERKRKS RGCIV +L L++V+V G
Sbjct: 86 GAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAG 123
>UniRef50_Q8SRY0 Cluster: 40S ribosomal protein S6; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S6 -
Encephalitozoon cuniculi
Length = 203
Score = 55.2 bits (127), Expect = 4e-07
Identities = 24/63 (38%), Positives = 43/63 (68%)
Frame = +3
Query: 66 LFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQGFPMKHGVLTNSRVR 245
+FE+ +++R+ Y+K++G + + LG+E++G ++ + G+D QGFPM G LT RVR
Sbjct: 1 MFEIERRNEVRL-YDKKIGDQFDGGILGEEFEGTIMEITGGDDYQGFPMVSGHLTKKRVR 59
Query: 246 LLM 254
L+
Sbjct: 60 PLL 62
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 53.6 bits (123), Expect = 1e-06
Identities = 24/39 (61%), Positives = 29/39 (74%)
Frame = +2
Query: 260 GHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKGA 376
GH Y P +DGE KRKS RGCIV ++ VLAL +V+KGA
Sbjct: 85 GHKGYRPRKDGEMKRKSIRGCIVGQDIRVLALQVVKKGA 123
>UniRef50_Q3LVW0 Cluster: Ribosomal protein S6; n=1; Bigelowiella
natans|Rep: Ribosomal protein S6 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 239
Score = 41.9 bits (94), Expect = 0.004
Identities = 27/94 (28%), Positives = 50/94 (53%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
MK+N++ P G Q + DE I K +G +E LG+++ + G+DKQG
Sbjct: 1 MKINIADPILGTQYSIKRDDEFIEHIIGRK-IGDTIEGSILGEDFSRNEFLINGGHDKQG 59
Query: 204 FPMKHGVLTNSRVRLLMQMATHVTYRSAMERENV 305
F +K + T R+++ ++ + + RS +R+N+
Sbjct: 60 FLLKKNLNTFERLKINVKKGS-LGNRSHFKRKNL 92
>UniRef50_UPI0000DC1AEC Cluster: UPI0000DC1AEC related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC1AEC UniRef100 entry -
Rattus norvegicus
Length = 227
Score = 39.9 bits (89), Expect = 0.015
Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +3
Query: 27 KLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQGF 206
KLN+S+ Q L EV + KLR FYEK M E+ + +E N + F
Sbjct: 2 KLNISFLLIVYQILTEVDGKCKLRAFYEKCMTTEITVNFSCEE-----------NADKIF 50
Query: 207 PMKHGVLTNSRVRLLMQMATHVTYRSAMERE-NVNHFVDVLLTPIS 341
MK VL + RV LL+ Y+ RE N D + PIS
Sbjct: 51 SMKQEVLIHFRVHLLLNNLHSYIYKPLRTREMNYTSLQDAVKLPIS 96
>UniRef50_Q2NGM7 Cluster: 30S ribosomal protein S6e; n=2;
Methanobacteriaceae|Rep: 30S ribosomal protein S6e -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 130
Score = 38.3 bits (85), Expect = 0.045
Identities = 21/51 (41%), Positives = 27/51 (52%)
Frame = +3
Query: 114 RMGAEVEADQLGDEWKGYVLRVAXGNDKQGFPMKHGVLTNSRVRLLMQMAT 266
++G E LG KGY LR+ G+DK GFPMK V R + L+ T
Sbjct: 30 KIGEEFNGGVLG--LKGYKLRITGGSDKNGFPMKEDVDGTRRFKSLVNGGT 78
>UniRef50_UPI00015BAF12 Cluster: SSU ribosomal protein S6E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S6E - Ignicoccus hospitalis KIN4/I
Length = 236
Score = 37.5 bits (83), Expect = 0.079
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 63 KLFEV-VDEHKLRIFYEKRMGAEVEADQLGDEW-KGYVLRVAXGNDKQGFPMKHGVLTNS 236
K F++ ++ R F KR+G V A LG E KG L + G+D+ GFPM+ +
Sbjct: 133 KAFQITIEGENARKFIGKRIGETVPASILGIETLKGLQLEIRGGSDESGFPMRPDIPGPV 192
Query: 237 RVRLLM 254
+ R L+
Sbjct: 193 KKRALL 198
>UniRef50_Q5JDK8 Cluster: 30S ribosomal protein S6e; n=1;
Thermococcus kodakarensis KOD1|Rep: 30S ribosomal
protein S6e - Pyrococcus kodakaraensis (Thermococcus
kodakaraensis)
Length = 125
Score = 37.5 bits (83), Expect = 0.079
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Frame = +3
Query: 18 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLG---DEWKGYV------ 170
A KL +S P G K E+ ++ +R+G E+ A +LG E G
Sbjct: 2 ATFKLVISNPKNGVAKQVEISGPEADKLI-GRRIGEEIPASELGLNLSEIFGEEIPADAK 60
Query: 171 LRVAXGNDKQGFPMKHGVLTNSRVRLLMQMATHVTYRSAMER 296
L++ G DK GFPM+ V RV++L+ R ER
Sbjct: 61 LKITGGTDKDGFPMRPDVHGPRRVKILLSRGPGFRPRERGER 102
>UniRef50_Q8U3H8 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Pyrococcus
furiosus
Length = 125
Score = 37.1 bits (82), Expect = 0.10
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Frame = +3
Query: 18 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQL--------GDEWKGYV- 170
A KL +S P +G K E+ ++ KR+G ++ A +L G E+ V
Sbjct: 2 ATFKLVISDPKSGIAKQVEITGAETEKLI-GKRIGDQIPAKELNINLNELFGKEFPEDVK 60
Query: 171 LRVAXGNDKQGFPMKHGVLTNSRVRLLM 254
L + G DK GFPM+ + RVR+L+
Sbjct: 61 LEIRGGTDKDGFPMRPDIHGPRRVRVLL 88
>UniRef50_Q01CM6 Cluster: Chromosome 03 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 03 contig 1, DNA
sequence - Ostreococcus tauri
Length = 211
Score = 36.3 bits (80), Expect = 0.18
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = -3
Query: 254 HQKTNTAVCQDAMFHRESLLVVAASDTKYIALPFI 150
H++ +T V Q A+ H E+LLVV D + ++LPF+
Sbjct: 177 HEQEHTLVRQHALLHAEALLVVTTHDLEDVSLPFL 211
>UniRef50_Q74MJ5 Cluster: 30S ribosomal protein S6e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S6e -
Nanoarchaeum equitans
Length = 126
Score = 35.9 bits (79), Expect = 0.24
Identities = 22/69 (31%), Positives = 38/69 (55%)
Frame = +3
Query: 18 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDK 197
+V+K+ VS P +G E + L Y K++G ++ ++G + GY L++ G+D
Sbjct: 5 SVVKIVVSDPKSGKAIQIETKEPQWL---YGKKIGDTIDGSKIGLD--GYELKITGGSDI 59
Query: 198 QGFPMKHGV 224
GFPM+ V
Sbjct: 60 AGFPMRKEV 68
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 34.7 bits (76), Expect = 0.56
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 263 HSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRK 370
HSC+ P + RK K+ R V+AN+S L LV+++K
Sbjct: 27 HSCFHPRCNKVRKCKTVRKYTVEANVSALTLVVLKK 62
>UniRef50_Q6LXY7 Cluster: 30S ribosomal protein S6e; n=4;
Archaea|Rep: 30S ribosomal protein S6e - Methanococcus
maripaludis
Length = 124
Score = 34.7 bits (76), Expect = 0.56
Identities = 15/49 (30%), Positives = 31/49 (63%)
Frame = +3
Query: 111 KRMGAEVEADQLGDEWKGYVLRVAXGNDKQGFPMKHGVLTNSRVRLLMQ 257
K++G E+ + E +GY L++ G+D+ GF M+H + ++R+L++
Sbjct: 28 KKIGDEISGSIV--ELEGYKLKITGGSDRCGFAMRHDIHGAMKMRVLLK 74
>UniRef50_Q9HMJ5 Cluster: 30S ribosomal protein S6e; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S6e -
Halobacterium salinarium (Halobacterium halobium)
Length = 131
Score = 34.3 bits (75), Expect = 0.74
Identities = 22/80 (27%), Positives = 40/80 (50%)
Frame = +3
Query: 18 AVMKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDK 197
A ++ V+ P +G FEV D F + +GA V+ +G + GY + + G+D
Sbjct: 2 ATFQVAVADPESGRTYQFEV-DGQDANRFIGREIGAAVDGGAVGLD--GYTVEITGGSDD 58
Query: 198 QGFPMKHGVLTNSRVRLLMQ 257
G PM+ V + + +L++
Sbjct: 59 AGRPMREDVDGSDLMEVLLE 78
>UniRef50_O29739 Cluster: 30S ribosomal protein S6e; n=7;
Euryarchaeota|Rep: 30S ribosomal protein S6e -
Archaeoglobus fulgidus
Length = 129
Score = 32.7 bits (71), Expect = 2.3
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +3
Query: 36 VSYPATG--CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQGFP 209
+S P TG QK+ E + ++L K++G +V + + D Y L++ G D+ GFP
Sbjct: 7 ISDPKTGRAYQKVVEGANANRL---IGKQIG-DVISGTIVDLPPDYELKITGGTDRDGFP 62
Query: 210 MKHGVLTNSRVRLLM 254
M+ + +R RLL+
Sbjct: 63 MRPDLPGTARRRLLL 77
>UniRef50_Q7VKW9 Cluster: Possible uroporphyrinogen III synthase;
n=1; Haemophilus ducreyi|Rep: Possible uroporphyrinogen
III synthase - Haemophilus ducreyi
Length = 251
Score = 32.3 bits (70), Expect = 3.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQL 146
M + ++YPA+ QKL ++ +H++ Y+ E+ AD L
Sbjct: 1 MNVLITYPASRAQKLVDMCQQHRIFAIYQPIFSVELGADLL 41
>UniRef50_A1SN07 Cluster: ATP-dependent helicase HrpA; n=4;
Actinomycetales|Rep: ATP-dependent helicase HrpA -
Nocardioides sp. (strain BAA-499 / JS614)
Length = 1282
Score = 32.3 bits (70), Expect = 3.0
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +3
Query: 75 VVDEHKLRIFYEKRMGAEVEADQLGDEW 158
VVDEH L FY+ R+GA+V + D+W
Sbjct: 774 VVDEHTLFDFYDARVGADVVSGAHFDQW 801
>UniRef50_Q2H5M1 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 494
Score = 31.9 bits (69), Expect = 3.9
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +2
Query: 155 MEGLCTSCRXRQRQARIPDETWRPDKQPCSSSDANGHSC---YIPLR 286
+ G C +CR R+ + +P + RP+ C SS GH+C +PLR
Sbjct: 6 LSGYCLTCRKRRVKCDVPADKGRPNCGRCISS---GHTCGGYELPLR 49
>UniRef50_A7IAP8 Cluster: Ribosomal protein S6e; n=2; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S6e -
Methanoregula boonei (strain 6A8)
Length = 143
Score = 31.9 bits (69), Expect = 3.9
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +3
Query: 111 KRMGAEVEADQLGDEWKGYVLRVAXGNDKQGFPMKHGVLTNSRVRLLMQMATHVTYRSAM 290
K++G EV+A LG GY + + G+D+ G P + + R +LL +A V + M
Sbjct: 32 KKIGDEVDAGPLG--LAGYKILITGGSDQTGTPARKSLPGAGRRKLL--LAEGVGFHPVM 87
Query: 291 ERE 299
E E
Sbjct: 88 EGE 90
>UniRef50_Q7RXT7 Cluster: Putative uncharacterized protein
NCU00421.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU00421.1 - Neurospora crassa
Length = 732
Score = 31.5 bits (68), Expect = 5.2
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -1
Query: 295 LSIAERYVT*VAICIRRRTRLFVRTPCFIGNP 200
LS++ + T +A CIR +T+LF R+ +G+P
Sbjct: 313 LSLSGEFTTAIAHCIREQTQLFTRSLYSVGHP 344
>UniRef50_A4HE40 Cluster: Putative uncharacterized protein; n=1;
Leishmania braziliensis|Rep: Putative uncharacterized
protein - Leishmania braziliensis
Length = 909
Score = 31.1 bits (67), Expect = 6.9
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +2
Query: 233 QPCSSSDANGHSCYIPLRDGERKRKSFRGCIVDANLSVLA 352
QPC +SDAN HS + R R+S G + DA V A
Sbjct: 811 QPCKASDANSHS--VSRRRSRHCRQSTGGAVRDARHDVAA 848
>UniRef50_Q93L33 Cluster: PssU; n=1; Rhizobium leguminosarum bv.
viciae|Rep: PssU - Rhizobium leguminosarum bv. viciae
Length = 152
Score = 30.7 bits (66), Expect = 9.1
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 249 EDEHGCLSGRHVSSGILACRCRXRHEVHSPSIH 151
E+ +GRH +GIL C + H++ P H
Sbjct: 90 EERQTVSNGRHKKNGILKCHVKIAHQIAGPIFH 122
>UniRef50_Q1EY35 Cluster: Major facilitator superfamily MFS_1
precursor; n=1; Clostridium oremlandii OhILAs|Rep: Major
facilitator superfamily MFS_1 precursor - Clostridium
oremlandii OhILAs
Length = 421
Score = 30.7 bits (66), Expect = 9.1
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -3
Query: 254 HQKTNTAVCQDAMFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVKDTKLVLVHH 75
++ T T + + + + S LV A +KY+ PFIA LI A+ + D +++
Sbjct: 116 YRATVTDIISEENYAKASGLVQIAGTSKYLISPFIAGLILTVSDIRAILIFDIATIIITA 175
Query: 74 F 72
F
Sbjct: 176 F 176
>UniRef50_A7IHI7 Cluster: Putative uncharacterized protein; n=1;
Xanthobacter autotrophicus Py2|Rep: Putative
uncharacterized protein - Xanthobacter sp. (strain Py2)
Length = 202
Score = 30.7 bits (66), Expect = 9.1
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +2
Query: 248 SDANGHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVR 367
S + G IPLR E+KR +FR I D S L ++R
Sbjct: 5 SMSKGMKWVIPLRKSEKKRNNFRDLIGDVKKSHLTACVMR 44
>UniRef50_A5E6S5 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 443
Score = 30.7 bits (66), Expect = 9.1
Identities = 14/24 (58%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -2
Query: 372 PLRTITRAKTERLASTI-HPRNDL 304
PL T+T A T+R+ ST+ HP NDL
Sbjct: 221 PLSTLTEAHTDRITSTMFHPINDL 244
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,179,918
Number of Sequences: 1657284
Number of extensions: 7618340
Number of successful extensions: 22407
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 21865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22396
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14019197511
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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