Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30334X
         (376 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   109   2e-25
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   109   2e-25
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ...    25   2.9  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   3.9  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    25   5.1  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    24   6.8  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    24   6.8  
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch...    24   9.0  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    24   9.0  
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc...    24   9.0  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  109 bits (261), Expect = 2e-25
 Identities = 52/92 (56%), Positives = 64/92 (69%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++  GNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 204 FPMKHGVLTNSRVRLLMQMATHVTYRSAMERE 299
           FPM  GVL   RVRLL++ A H  YR   + E
Sbjct: 61  FPMFQGVLLPHRVRLLLR-AGHPCYRPRRDGE 91



 Score = 60.5 bits (140), Expect = 8e-11
 Identities = 26/38 (68%), Positives = 31/38 (81%)
 Frame = +2

Query: 260 GHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKG 373
           GH CY P RDGERKRKS RGCIV  +L+VLAL I+++G
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQG 117


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  109 bits (261), Expect = 2e-25
 Identities = 52/92 (56%), Positives = 64/92 (69%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++  GNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 204 FPMKHGVLTNSRVRLLMQMATHVTYRSAMERE 299
           FPM  GVL   RVRLL++ A H  YR   + E
Sbjct: 61  FPMFQGVLLPHRVRLLLR-AGHPCYRPRRDGE 91



 Score = 60.9 bits (141), Expect = 6e-11
 Identities = 27/38 (71%), Positives = 31/38 (81%)
 Frame = +2

Query: 260 GHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKG 373
           GH CY P RDGERKRKS RGCIV  +L+VLAL IV++G
Sbjct: 80  GHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQG 117


>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 188 QRQARIP-DETWRPDKQPCSSSDANGHS 268
           QR+A I  D+ + PD+ P + + AN H+
Sbjct: 415 QRKAAIEEDDNYEPDENPLTETLANAHN 442


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 44  PGNGMPEVVRSGGRAQASYLLR 109
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 242 SSSDANGHSCYIPLRDGERKRKSF 313
           SS DANG S    L  G+ K KSF
Sbjct: 581 SSRDANGPSIDEKLAQGDPKAKSF 604


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 20  SHEVKRFVPGNGMPEV 67
           SH ++R++P N  PEV
Sbjct: 553 SHHLQRYIPKNWFPEV 568


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 200 RIPDETWRPDKQPCSSSDANGHSCYIPLRDGE 295
           R P ++  P+   CSS D N H  Y+ L  GE
Sbjct: 480 RFPKDSEFPEFFKCSSDDDNTH-FYVNLYTGE 510


>SPCC1020.09 |||WD repeat protein, human WDR79
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 399

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 335 WRQQYIHEMIYVFSLHRG 282
           W  +Y+ +M+Y    HRG
Sbjct: 282 WDIRYVRDMVYALEGHRG 299


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 327 TIHPRNDLRFLSPSRSGM*HEWPFASEDEHGC 232
           ++HP ++  FL+ S SG    W F  +    C
Sbjct: 281 SVHPTDNSFFLTTSSSGRWTIWQFLDDGYREC 312


>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 269 CYIPLRDGERKRKSFRGCI 325
           CY+ L D  R R++ R C+
Sbjct: 227 CYLRLSDNPRAREALRHCL 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,618,497
Number of Sequences: 5004
Number of extensions: 30883
Number of successful extensions: 90
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)