Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30334X
(376 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 107 3e-24
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 104 2e-23
12_02_0844 - 23609783-23609926,23610014-23610331,23610771-236109... 31 0.29
07_03_1510 + 27264999-27265371,27265485-27265546,27265768-272664... 28 2.7
03_02_0212 + 6461511-6461573,6461643-6461924,6462065-6462271,646... 28 2.7
10_05_0038 - 8458901-8459207,8459367-8459705,8459710-8459913,846... 27 3.6
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 27 3.6
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 3.6
07_01_0155 + 1102819-1104009,1104071-1104097 27 4.8
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230... 27 4.8
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 27 4.8
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 27 6.3
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 27 6.3
04_03_0919 + 20820010-20821707 27 6.3
01_07_0327 + 42752697-42752711,42753937-42754127,42754822-427549... 27 6.3
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 26 8.4
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 107 bits (257), Expect = 3e-24
Identities = 47/81 (58%), Positives = 59/81 (72%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ G DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQMAT 266
FPMK GVLT+ RVRLL+ T
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGT 81
Score = 48.8 bits (111), Expect = 1e-06
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +2
Query: 284 RDGERKRKSFRGCIVDANLSVLALVIVRKG 373
RDGER+RKS RGCIV +LSV+ LVIV+KG
Sbjct: 90 RDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 104 bits (250), Expect = 2e-23
Identities = 46/81 (56%), Positives = 58/81 (71%)
Frame = +3
Query: 24 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ G DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 204 FPMKHGVLTNSRVRLLMQMAT 266
FPMK GVLT RVRLL+ T
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGT 81
Score = 48.8 bits (111), Expect = 1e-06
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +2
Query: 284 RDGERKRKSFRGCIVDANLSVLALVIVRKG 373
RDGER+RKS RGCIV +LSV+ LVIV+KG
Sbjct: 90 RDGERRRKSVRGCIVSQDLSVINLVIVKKG 119
>12_02_0844 -
23609783-23609926,23610014-23610331,23610771-23610926,
23611068-23611318,23611384-23611530,23612450-23612501,
23612628-23612763,23613507-23613538
Length = 411
Score = 31.1 bits (67), Expect = 0.29
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +3
Query: 87 HKL-RIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQGFPMKHGVLTNSRVRLLMQMA 263
HKL + Y +M +EVE D +W+ Y ++ G K PM+ + T ++ Q A
Sbjct: 190 HKLYKRAYHPKMISEVELD---GKWRQYKSKLKRGYYKPNLPMERVLQTVPKIVAKSQWA 246
Query: 264 THVTY 278
T V+Y
Sbjct: 247 TLVSY 251
>07_03_1510 +
27264999-27265371,27265485-27265546,27265768-27266436,
27266842-27267288
Length = 516
Score = 27.9 bits (59), Expect = 2.7
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -2
Query: 258 FASEDEHGCLSGRHVSSGILACRCRXRHEVHSPSIHR-LTDQPLLRRPCAFR 106
FA E EHG + R + + A + H P I R + +Q + C R
Sbjct: 399 FAQELEHGQIKRRFIKRLVDALNANMKQNAHCPGIRRVILEQSIYMMECNSR 450
>03_02_0212 +
6461511-6461573,6461643-6461924,6462065-6462271,
6463187-6463285,6463649-6463713,6464327-6464471,
6466065-6466151
Length = 315
Score = 27.9 bits (59), Expect = 2.7
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 189 NDKQGFPMKHGVLTNSRVRLLMQMATHVTYRSAMERENV 305
N QGFP+ H V + L H+ RSA+ +EN+
Sbjct: 273 NGNQGFPLAHVVAYKAGHALHTDFLRHLLGRSAVGQENL 311
>10_05_0038 -
8458901-8459207,8459367-8459705,8459710-8459913,
8460374-8460492
Length = 322
Score = 27.5 bits (58), Expect = 3.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 167 CTSCRXRQRQARIPDETWRPDKQPCSSS 250
C+SCR + R+ R D W+ + PC +S
Sbjct: 267 CSSCRNKLRRPRAQDWEWK--RSPCLAS 292
>02_05_0101 -
25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 27.5 bits (58), Expect = 3.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 194 QARIPDETWRPDKQPCSSSDANGHS 268
Q+ +P+ ++ +K P +D NGHS
Sbjct: 565 QSDLPESVYQVEKVPVKDNDGNGHS 589
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +3
Query: 60 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 149
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
>07_01_0155 + 1102819-1104009,1104071-1104097
Length = 405
Score = 27.1 bits (57), Expect = 4.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -2
Query: 231 LSGRHVSSGILACRCRXRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACA 85
+S RH + + H + S +TD LLR+ F++ YE C+
Sbjct: 25 VSERHNLEKLEMAHAQLEHALERSSKLPITDVSLLRQRRMFKRAYEECS 73
>03_02_0752 -
10922456-10922644,10922719-10922796,10922888-10923016,
10923105-10923152,10923243-10923333,10923517-10923648,
10923869-10924086,10925121-10925271,10925360-10926009,
10926715-10926786,10926938-10926985,10927105-10927242,
10927750-10927756,10928064-10928212
Length = 699
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 113 LFVKDTKLVLVHHFEQLLASRCRVRNV*LHDCGQS 9
LF+ T V + F+ L RC V + LH C Q+
Sbjct: 76 LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQN 110
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 27.1 bits (57), Expect = 4.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 330 STIHPRNDLRFLSPSRSGM*HE 265
S +HPRN LR ++PS S H+
Sbjct: 430 SVLHPRNSLRTVNPSDSHAHHQ 451
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 215 TWRPDKQPCSSSDANGHSCYIPLRDGERKRKS 310
TW P ++S A G + I RD RK++S
Sbjct: 274 TWNPSGSGVAASAAPGSAAQIGRRDRRRKKRS 305
>08_02_1236 + 25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 26.6 bits (56), Expect = 6.3
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 275 IPLRD-GERKRKSFRGCIVDANLSVLALVIVRK 370
+PLR+ G RK + + V A +SVLALV+ K
Sbjct: 1397 LPLRNKGRRKMRQYIMVAVAAVISVLALVVASK 1429
>04_03_0919 + 20820010-20821707
Length = 565
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 263 HSCYIPLRDGERKRKSFRGCIVDANL 340
+S Y P++ + K GC+VDANL
Sbjct: 480 YSFYFPMQVARKLLKGEIGCLVDANL 505
>01_07_0327 +
42752697-42752711,42753937-42754127,42754822-42754919,
42755792-42755880
Length = 130
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 231 LSGRHVSSGILACRCRXRHEVHSPSIHRLTDQPL 130
+ G++V+S ++AC C H P D PL
Sbjct: 62 MEGQYVASWLIACYCTCSHHSTCPEETLTQDPPL 95
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 26.2 bits (55), Expect = 8.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 108 RKRYEACARPPLRTTSGIPLPGTKRL 31
R R RPP R++S +PLP R+
Sbjct: 251 RPRLSRRPRPPRRSSSPVPLPSPHRI 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,169,033
Number of Sequences: 37544
Number of extensions: 229271
Number of successful extensions: 785
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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