Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30334X
         (376 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)               76   1e-14
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   36   0.011
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.93 
SB_51108| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.93 
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)                    29   1.2  
SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)                   27   6.5  
SB_22145| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_34022| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      26   8.7  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 39/82 (47%), Positives = 46/82 (56%)
 Frame = +3

Query: 126 EVEADQLGDEWKGYVLRVAXGNDKQGFPMKHGVLTNSRVRLLMQMATHVTYRSAMERENV 305
           EV  + LGDEWKGYV R+  GNDKQGFPMK G++TN RVRLL+    H  YR     E  
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKG-HSCYRPRRTGERK 60

Query: 306 NHFVDVLLTPISRSWLLLLCAK 371
              V   +     S L L+  K
Sbjct: 61  RKSVRGCIVDSQLSVLSLVIVK 82



 Score = 66.9 bits (156), Expect = 5e-12
 Identities = 30/40 (75%), Positives = 34/40 (85%)
 Frame = +2

Query: 254 ANGHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKG 373
           + GHSCY P R GERKRKS RGCIVD+ LSVL+LVIV+KG
Sbjct: 45  SKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKG 84


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -3

Query: 251 QKTNTAVCQDAMFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 102
           Q+ + A+  D + H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 257 QEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 258  FASEDEHGCLSGRHVSSGILACRCRXRHEVHSPSIHRL 145
            F+S DE+      H+ +G++   CR   EVH   I R+
Sbjct: 1033 FSSNDEYARYVRDHIQTGMMVRCCRTYEEVHEGDIGRV 1070


>SB_51108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +2

Query: 200 RIPDETWR--PDKQPCSSSDANGHS 268
           ++P+ETW+  P+K  C++ + NG S
Sbjct: 60  KLPNETWKFSPEKDSCTADEVNGFS 84


>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
          Length = 592

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +2

Query: 203 IPDETWRPDKQPCSSSDANGHSCYIPLRDGERK 301
           + ++  +P KQ  +S  A+GH+ Y PL+DGE +
Sbjct: 142 VQEKARKPTKQ--ASGVAHGHTYYEPLKDGESR 172


>SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 102 FYEKRMGAEVEADQLGDEWKGYVL-RVAXGNDKQG 203
           FY K++   ++   L +EW+ +V   +A G DK G
Sbjct: 10  FYNKKLEDYMKNTSLNEEWQDWVRHNIAAGCDKNG 44


>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
          Length = 1081

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 153 HRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLP 46
           H ++ + L RR  A R+   ACAR P   ++  P+P
Sbjct: 698 HFMSCKTLGRRSLASRRDARACARAPKMPSAHTPVP 733


>SB_22145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +2

Query: 230 KQPCSSSDANGHSCYIP---LRDGERK-RKSFRGCIVDANLS 343
           K+PCS +  + HS  IP   L   +RK  +  RGC V   LS
Sbjct: 47  KRPCSDAGCHRHSMVIPDPYLDQTQRKLLRQKRGCRVHRRLS 88


>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 161  GLCTSCRXRQRQARIPDETW-RPDKQPCSSSDANG 262
            G+   CR   R+ R  D+TW  PD+ P S    +G
Sbjct: 1728 GIDRECRSIDRECRCIDDTWNNPDEFPRSFIKGSG 1762


>SB_36564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 422

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 222 RHVSSGILACRCRXRHEVHSPSIHR---LTDQPLLRRPCAFR 106
           RH +  +L   C  RH    P  +R   +TD PLL+ PC +R
Sbjct: 216 RHPAIPLLQTPCYYRH----PRYYRHPTITDIPLLQTPCYYR 253


>SB_34022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 134 LYFGAHALFVKDTKL-VLVHHFEQLLASRCRVRN 36
           LY+  H +F     + VL H+  + L  R R+RN
Sbjct: 72  LYYATHPVFFSSRAVYVLTHNLSKNLGYRARIRN 105


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 132 EADQLGDEWKGYVL-RVAXG-NDKQGFPMK 215
           E D+ G EW+G+V  +   G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,805,553
Number of Sequences: 59808
Number of extensions: 268159
Number of successful extensions: 788
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 619783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)