Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30334X
         (376 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   124   3e-29
Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical pr...    30   0.62 
U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like ...    28   1.9  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    27   3.3  
Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical pr...    27   4.4  
Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger p...    27   4.4  
U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin pr...    27   5.8  
U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family ...    27   5.8  
U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical pr...    26   7.6  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  124 bits (298), Expect = 3e-29
 Identities = 62/116 (53%), Positives = 75/116 (64%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
           M+LN +YPATG QK FEV +E KLR+F+EKRM  EV  D LGDEWKGYV+R+  GNDKQG
Sbjct: 1   MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60

Query: 204 FPMKHGVLTNSRVRLLMQMATHVTYRSAMERENVNHFVDVLLTPISRSWLLLLCAK 371
           FPMK G+LTN RVRLL++      YR     E     V   +   + S L L+  K
Sbjct: 61  FPMKQGILTNGRVRLLLKKG-QSCYRERKNGERKRKSVRGCIVDANMSALSLVIVK 115



 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = +2

Query: 260 GHSCYIPLRDGERKRKSFRGCIVDANLSVLALVIVRKG 373
           G SCY   ++GERKRKS RGCIVDAN+S L+LVIV+KG
Sbjct: 80  GQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKG 117


>Z54281-4|CAA91049.1|  199|Caenorhabditis elegans Hypothetical
           protein F46C5.7 protein.
          Length = 199

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = -3

Query: 323 YIHEMIYVFSLHRGAVCNMSGHLHQKTNTAVCQDAMFHRESLLVVAASDTKYIALPFIA* 144
           ++  ++Y+   + G+V N    LH  T +A     +     L+ +   ++ YIA  ++A 
Sbjct: 68  FVFVLLYL-EFYFGSVYNCPALLHLHTLSAAFMSMVCWLSVLIPIFFGESIYIASRYVAH 126

Query: 143 LISLYFGAHALF 108
           +I  Y+G   +F
Sbjct: 127 VIYKYYGCQVIF 138


>U55855-3|AAA98019.2|  893|Caenorhabditis elegans Ubiquitin-like
           protease protein 2 protein.
          Length = 893

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -3

Query: 374 HLCAQ*QEPRPRDWRQQYIHEMIYVFSLHRGAV--CNMSGHLHQKTNTAVCQDAMFHR 207
           +L +Q  E  PR+W Q    + +     H G++    +  + H + +TAV  +   HR
Sbjct: 205 YLTSQLSEMTPREWVQFLADQKLSKIVCHNGSIQYARVEDNPHGRKHTAVATNGFDHR 262


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 185 RQRQARIPD-ETWRPDKQPCSSSDANGHSCYIPLRDG 292
           R R  R PD E    +++PCSSS +  +  ++P   G
Sbjct: 18  RPRGPRTPDGEPTEANERPCSSSSSLSNDSFVPAPQG 54


>Z70754-2|CAC42308.1|  764|Caenorhabditis elegans Hypothetical
           protein F58E6.1b protein.
          Length = 764

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 174 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 37
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390


>Z70754-1|CAA94771.2|  966|Caenorhabditis elegans Hypothetical
           protein F58E6.1a protein.
          Length = 966

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 174 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 37
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 345 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 390


>AF164113-1|AAD45535.1|  810|Caenorhabditis elegans zinc finger
           protein STAT-B protein.
          Length = 810

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 174 EVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLPGTK 37
           + ++ + +++  +  LRR     KRY  C    L+T  GI L G K
Sbjct: 391 DTNNENSNKVAKKVALRRDSVATKRYCLCYNIQLQTNCGIELVGKK 436


>U40483-1|AAA99775.1|  322|Caenorhabditis elegans NEX1 annexin
           protein.
          Length = 322

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +3

Query: 93  LRIFYEKRMGAEVEADQLGD---EWKGYVLRVAXGNDKQGFPMKHGVLTNSRVRLLMQMA 263
           +R+ YEK  G  +EAD  GD   E++  ++ +  G+             +  VRL     
Sbjct: 122 IRVTYEKEYGKALEADIAGDTSGEFRDLLVSLVTGSKDGSHDTNDAQAKDDAVRLF---- 177

Query: 264 THVTYRSAMERENVNHFVDVLLT 332
                ++ + +++  HF+ +L T
Sbjct: 178 --ADGKAKLAKKDGTHFLHILAT 198


>U00064-7|AAB52702.1|  322|Caenorhabditis elegans Annexin family
           protein 1 protein.
          Length = 322

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
 Frame = +3

Query: 93  LRIFYEKRMGAEVEADQLGD---EWKGYVLRVAXGNDKQGFPMKHGVLTNSRVRLLMQMA 263
           +R+ YEK  G  +EAD  GD   E++  ++ +  G+             +  VRL     
Sbjct: 122 IRVTYEKEYGKALEADIAGDTSGEFRDLLVSLVTGSKDGSHDTNDAQAKDDAVRLF---- 177

Query: 264 THVTYRSAMERENVNHFVDVLLT 332
                ++ + +++  HF+ +L T
Sbjct: 178 --ADGKAKLAKKDGTHFLHILAT 198


>U41010-4|AAV28333.1| 1622|Caenorhabditis elegans Hypothetical protein
            T05A12.4a protein.
          Length = 1622

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 256  CIRRRTRLFVRTPCFIGNPCLSLPXATRST 167
            C+ R   + +    F G PCLSLP     T
Sbjct: 1064 CMGRCNNIVMECEVFNGQPCLSLPDVMSKT 1093


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,156,305
Number of Sequences: 27780
Number of extensions: 180091
Number of successful extensions: 539
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)