Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30334X
         (376 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   0.67 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   2.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   6.3  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   6.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   8.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   8.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   8.3  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 0.67
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -2

Query: 201 LACRCRXRHEVHSPSIHRLTDQPLLRRP-CAFRKRYEACARPPLRTTSGIPLPGTKRLT 28
           ++ R   RH VHS +   +  + LL+R  C  RK          R  +  PL    ++T
Sbjct: 52  ISSRRNGRHNVHSLAFGAIQLRQLLKRQLCEKRKEVSIITEDSSRKQTIDPLSSNTQIT 110


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 206 PDETWRPDKQPCSSSDAN 259
           PD+ W+PD    +++D N
Sbjct: 105 PDKVWKPDIVLFNNADGN 122


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 114 RMGAEVEADQLGDEWKGYV 170
           R+G  +++D L +  +GYV
Sbjct: 227 RIGLRIQSDSLAENVEGYV 245


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 73  SNNFWHPVAGYETFN 29
           +NN ++P   Y TFN
Sbjct: 222 TNNLFYPYPPYGTFN 236


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +2

Query: 11  IDRSHEVKRFVPGNGMP 61
           I+ +HE  +++PG+ +P
Sbjct: 55  INETHENVKYLPGHKLP 71


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 253 IRRRTRLFVRTPCFI 209
           +R+R  LF+   CF+
Sbjct: 411 LRKRKELFIAIVCFV 425


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 253 IRRRTRLFVRTPCFI 209
           +R+R  LF+   CF+
Sbjct: 464 LRKRKELFIAIVCFV 478


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 57  CQKLFEVVDEHKLRIFYEKRMGAEVEAD 140
           CQ  F+        +  EKR G  VE D
Sbjct: 43  CQNWFDKFRSGDFSLKDEKRSGRPVEVD 70


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 94  SLCSSTTSNNFWHP 53
           S  SS+  N+FW P
Sbjct: 376 SSISSSEENDFWQP 389


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 189 CRXRHEVHSPSI 154
           CR RHE+ S  +
Sbjct: 522 CRPRHEIRSTDV 533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,948
Number of Sequences: 438
Number of extensions: 2102
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)