Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30334X
         (376 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...   106   4e-24
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)             105   1e-23
At1g21740.1 68414.m02721 expressed protein contains Pfam domains...    30   0.58 
At2g45340.1 68415.m05642 leucine-rich repeat transmembrane prote...    28   2.3  
At5g54550.1 68418.m06791 expressed protein contains Pfam profile...    26   7.1  
At4g31240.2 68417.m04435 expressed protein                             26   7.1  
At4g31240.1 68417.m04434 expressed protein                             26   7.1  
At4g24670.2 68417.m03532 alliinase family protein contains Pfam ...    26   7.1  
At4g24670.1 68417.m03531 alliinase family protein contains Pfam ...    26   7.1  
At1g26510.1 68414.m03231 F-box family protein contains F-box dom...    26   7.1  
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ...    26   9.4  
At3g24820.1 68416.m03114 BSD domain-containing protein contains ...    26   9.4  
At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal hydrolase-r...    26   9.4  
At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH p...    26   9.4  
At1g67280.1 68414.m07657 lactoylglutathione lyase, putative / gl...    26   9.4  
At1g08490.1 68414.m00940 cysteine desulfurase, putative similar ...    26   9.4  

>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score =  106 bits (255), Expect = 4e-24
 Identities = 48/81 (59%), Positives = 58/81 (71%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
           MK NV+ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++  G DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 204 FPMKHGVLTNSRVRLLMQMAT 266
           FPMK GVLT  RVRLL+   T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81



 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +2

Query: 284 RDGERKRKSFRGCIVDANLSVLALVIVRKG 373
           R GER+RKS RGCIV  +LSVL LVIV+KG
Sbjct: 90  RTGERRRKSVRGCIVSPDLSVLNLVIVKKG 119


>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score =  105 bits (252), Expect = 1e-23
 Identities = 47/81 (58%), Positives = 58/81 (71%)
 Frame = +3

Query: 24  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQG 203
           MK NV+ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++  G DKQG
Sbjct: 1   MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 204 FPMKHGVLTNSRVRLLMQMAT 266
           FPMK GVLT  RVRLL+   T
Sbjct: 61  FPMKQGVLTPGRVRLLLHRGT 81



 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 22/30 (73%), Positives = 25/30 (83%)
 Frame = +2

Query: 284 RDGERKRKSFRGCIVDANLSVLALVIVRKG 373
           R GER+RKS RGCIV  +LSVL LVIV+KG
Sbjct: 90  RTGERRRKSVRGCIVSPDLSVLNLVIVKKG 119


>At1g21740.1 68414.m02721 expressed protein contains Pfam domains,
           PF04782: Protein of unknown function (DUF632) and
           PF04783: Protein of unknown function (DUF630)
          Length = 953

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 9   GLTAVMKLNVSYPATGCQKLF-EVVDEHKLRIFYEKRMGAEVEADQLGDE 155
           GLT  +   +       +KL+ EV DE KLR+ YE++     + D LG E
Sbjct: 585 GLTGNLSATLEQLYAWEKKLYKEVKDEEKLRVVYEEKCRTLKKLDSLGAE 634


>At2g45340.1 68415.m05642 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 691

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 215 TWRPDKQPCSSSDANGHSC 271
           +W PD  PCSS   +G +C
Sbjct: 46  SWTPDADPCSSGSFDGVAC 64


>At5g54550.1 68418.m06791 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 359

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 20/59 (33%), Positives = 28/59 (47%)
 Frame = -2

Query: 258 FASEDEHGCLSGRHVSSGILACRCRXRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACAR 82
           F+ +DE   + G   S G L      R E H+P I RL  + L   P A R+  ++C R
Sbjct: 190 FSKKDEMFRIPG---SGGHLIGSWDLRTEDHNPKIQRLRFRNLPELPRAKRELLDSCYR 245


>At4g31240.2 68417.m04435 expressed protein
          Length = 392

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 212 HRESLLVVAASDTKYIALPFIA*LISLYFGAH 117
           H     VVA + +K +    +   I LYFGAH
Sbjct: 182 HESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At4g31240.1 68417.m04434 expressed protein
          Length = 392

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 212 HRESLLVVAASDTKYIALPFIA*LISLYFGAH 117
           H     VVA + +K +    +   I LYFGAH
Sbjct: 182 HESRNYVVARNGSKVLVSKLVGKTIGLYFGAH 213


>At4g24670.2 68417.m03532 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 440

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 224 DAMFHRESLLVVAASDTKYIALP 156
           DAM+ R  LL  AA DTK  ++P
Sbjct: 335 DAMYERWKLLKQAAKDTKRFSVP 357


>At4g24670.1 68417.m03531 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 440

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 224 DAMFHRESLLVVAASDTKYIALP 156
           DAM+ R  LL  AA DTK  ++P
Sbjct: 335 DAMYERWKLLKQAAKDTKRFSVP 357


>At1g26510.1 68414.m03231 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 686

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 219 HVSSGILACRCRXRHEVHSPSIHRLTDQPLLRR 121
           H +SG+++  C  +  V +PS  R    P +RR
Sbjct: 469 HYASGLISIGCNRKQIVTNPSTGRFITLPSVRR 501


>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); rab11 binding protein, Bos
           taurus, EMBL:AF117897
          Length = 905

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 323 YIHEMIYVFSLHRGAVCNMSGHL 255
           Y+H    VFSL    +C+ +GHL
Sbjct: 497 YVHAPETVFSLSDKPICSFTGHL 519


>At3g24820.1 68416.m03114 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 186

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 126 EVEADQLGDEWKGYVLRVAXGNDKQGFPMKHGVLTNSRVRLLMQMATHVTYRSAMERE 299
           EV  + LGDE  G         D   +  KH VL  S+ + L Q+   +  R   E +
Sbjct: 68  EVSVNPLGDEDNGMSSSANVKKDLSDWQEKHAVLVLSKSKELSQLRFKLCPRVLKEHQ 125


>At2g27630.1 68415.m03350 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF04780:
           Protein of unknown function (DUF629), PF04781: Protein
           of unknown function (DUF627)
          Length = 1122

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 285 RSGM*HEWPFASEDEHGCL 229
           ++G   EWP AS+DE G L
Sbjct: 327 KNGWSKEWPLASDDERGKL 345


>At2g14760.1 68415.m01667 basic helix-loop-helix protein / bHLH
           protein contains Pfam profile PF00010: Helix-loop-helix
           DNA-binding domain; PMID: 12679534; putative bHLH084
           transcription factor
          Length = 328

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 221 RPDKQPCSSSDANGHSCYIPLRDGE 295
           +P K  CS  ++NG   ++   DGE
Sbjct: 202 KPQKTCCSDDESNGGDTFLSKEDGE 226


>At1g67280.1 68414.m07657 lactoylglutathione lyase, putative /
           glyoxalase I, putative similar to putative
           lactoylglutathione lyase SP:Q39366, GI:2494843 from
           [Brassica oleracea]
          Length = 350

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 45  PATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAXGNDKQGFPM 212
           P   CQ +  V D  +   FYEK  G E+   +   E+K Y + +     +  FP+
Sbjct: 216 PEPLCQVMLRVGDLDRAIKFYEKAFGMELLRTRDNPEYK-YTIAMMGYGPEDKFPV 270


>At1g08490.1 68414.m00940 cysteine desulfurase, putative similar to
           nitrogen fixation protein (nifS) GB:D64004 GI:1001701
           from [Synechocystis sp]; contains TIGRFAM TIGR01364:
           phosphoserine aminotransferase; contains Pfam PF00266:
           aminotransferase, class V
          Length = 463

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 98  TKLVLVHHFEQLLASRCRVRNV*L--HDCG 15
           TKLV VHH   +LAS   +  + +  HD G
Sbjct: 214 TKLVAVHHVSNVLASSLPIEEIVVWAHDVG 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,692,966
Number of Sequences: 28952
Number of extensions: 170255
Number of successful extensions: 498
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 507810264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)