BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30333 (801 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|... 27 3.1 SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 27 3.1 SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 27 4.1 SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 5.4 SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 7.2 SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 9.5 SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 9.5 >SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr 3|||Manual Length = 418 Score = 27.1 bits (57), Expect = 3.1 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +1 Query: 478 LVTVCLKTDTLKHVLFKLYFTLSFKCVSCMFLTVLLQSYMY 600 L+ VC+ TLKH+LF L+ L + SC+ + Y++ Sbjct: 253 LLLVCIPIWTLKHMLFGLFQVLGVQ--SCVVIVTKGLMYLF 291 >SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr 3|||Manual Length = 402 Score = 27.1 bits (57), Expect = 3.1 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +1 Query: 478 LVTVCLKTDTLKHVLFKLYFTLSFKCVSCMFLTVLLQSYMY 600 L+ VC+ TLKH+LF L+ L + SC+ + Y++ Sbjct: 243 LLLVCIPIWTLKHMLFGLFQVLGVQ--SCVVIVTKGLMYLF 281 >SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 834 Score = 26.6 bits (56), Expect = 4.1 Identities = 10/26 (38%), Positives = 14/26 (53%) Frame = -3 Query: 361 HQNPLRSFKDLSIHRDIGTEKATLFY 284 H NP+ + K H +K+TLFY Sbjct: 757 HPNPMTTLKRKGQHNSFSYDKSTLFY 782 >SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 963 Score = 26.2 bits (55), Expect = 5.4 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = -2 Query: 584 SKTVRNIQETHLNDKVKYNLKSTCFNVSVFKHTVTSDPPXFASETVI 444 SK N++E+H+N+ L S +V++ PP +++T I Sbjct: 510 SKVPENLKESHVNETPYRGLHDVNLPASGNASSVSAIPPQVSAQTTI 556 >SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizosaccharomyces pombe|chr 3|||Manual Length = 1338 Score = 25.8 bits (54), Expect = 7.2 Identities = 8/21 (38%), Positives = 15/21 (71%) Frame = +2 Query: 149 LPPAKLLLNFESIISIRYYLP 211 +PP K+++NF+ + S+R P Sbjct: 317 IPPVKIIVNFDKVDSLRVQSP 337 >SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase Fab1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1932 Score = 25.4 bits (53), Expect = 9.5 Identities = 12/20 (60%), Positives = 12/20 (60%) Frame = -3 Query: 133 CTGWHRHPHEFYRETDVCLG 74 C G R EFYRETD LG Sbjct: 939 CIGPERCLLEFYRETDCTLG 958 >SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 1405 Score = 25.4 bits (53), Expect = 9.5 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = -3 Query: 352 PLRSFKDLSIHRDIGTEKATLFYTM**LDTYDHLSEKRYR 233 P + F +L R G +A+ + + + YD++SE+ YR Sbjct: 10 PSQRFAELRALRQAGKTRASTYESKENEELYDNVSEEEYR 49 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,266,535 Number of Sequences: 5004 Number of extensions: 68141 Number of successful extensions: 149 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 149 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 388424860 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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