Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30333
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    27   3.1  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    27   3.1  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    27   4.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   5.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   7.2  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   9.5  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   9.5  

>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 478 LVTVCLKTDTLKHVLFKLYFTLSFKCVSCMFLTVLLQSYMY 600
           L+ VC+   TLKH+LF L+  L  +  SC+ +      Y++
Sbjct: 253 LLLVCIPIWTLKHMLFGLFQVLGVQ--SCVVIVTKGLMYLF 291


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 478 LVTVCLKTDTLKHVLFKLYFTLSFKCVSCMFLTVLLQSYMY 600
           L+ VC+   TLKH+LF L+  L  +  SC+ +      Y++
Sbjct: 243 LLLVCIPIWTLKHMLFGLFQVLGVQ--SCVVIVTKGLMYLF 281


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 361 HQNPLRSFKDLSIHRDIGTEKATLFY 284
           H NP+ + K    H     +K+TLFY
Sbjct: 757 HPNPMTTLKRKGQHNSFSYDKSTLFY 782


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 584 SKTVRNIQETHLNDKVKYNLKSTCFNVSVFKHTVTSDPPXFASETVI 444
           SK   N++E+H+N+     L       S    +V++ PP  +++T I
Sbjct: 510 SKVPENLKESHVNETPYRGLHDVNLPASGNASSVSAIPPQVSAQTTI 556


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 149 LPPAKLLLNFESIISIRYYLP 211
           +PP K+++NF+ + S+R   P
Sbjct: 317 IPPVKIIVNFDKVDSLRVQSP 337


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -3

Query: 133 CTGWHRHPHEFYRETDVCLG 74
           C G  R   EFYRETD  LG
Sbjct: 939 CIGPERCLLEFYRETDCTLG 958


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 352 PLRSFKDLSIHRDIGTEKATLFYTM**LDTYDHLSEKRYR 233
           P + F +L   R  G  +A+ + +    + YD++SE+ YR
Sbjct: 10  PSQRFAELRALRQAGKTRASTYESKENEELYDNVSEEEYR 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,266,535
Number of Sequences: 5004
Number of extensions: 68141
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)