BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30333 (801 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156 30 2.5 05_04_0250 + 19370155-19370690,19370888-19370948,19371240-193712... 28 9.9 >03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156 Length = 405 Score = 29.9 bits (64), Expect = 2.5 Identities = 10/29 (34%), Positives = 19/29 (65%) Frame = +1 Query: 40 NCIVYRLSHPKNPNKHLFRGRIREDGGAN 126 +C+V + P+NP + +R +R++GG N Sbjct: 169 SCLVLTSNTPRNPGRKFYRCPMRDNGGCN 197 >05_04_0250 + 19370155-19370690,19370888-19370948,19371240-19371261, 19372395-19372452,19372580-19372652,19372907-19372999 Length = 280 Score = 27.9 bits (59), Expect = 9.9 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 125 LAPPSSRILPRNRCLFGFLGWDSR 54 L P SR+LP + C FGFL SR Sbjct: 110 LEPEVSRLLPMSPCAFGFLRHCSR 133 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,190,055 Number of Sequences: 37544 Number of extensions: 395484 Number of successful extensions: 821 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 803 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 821 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2174172540 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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