Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30333
         (801 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30173| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_45686| Best HMM Match : T-box (HMM E-Value=0)                       28   7.7  
SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_30173| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 5   KSHNCRHGGKVATVLYI-GCPTLKTQTNICFAVEFVRM 115
           K HN   G K  T+LY+ G P ++  TN    V F+R+
Sbjct: 58  KPHNVEPGVKYPTILYVYGGPQVQLVTNSHKGVRFLRL 95


>SB_45686| Best HMM Match : T-box (HMM E-Value=0)
          Length = 947

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 98  VEFVRMAVPTRAGSQYALPPAKLLLNFESI 187
           V+ ++   P+RA SQ ALPP+  LL+F  +
Sbjct: 491 VKLLQPQTPSRALSQRALPPSLSLLSFRPV 520


>SB_22098| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +2

Query: 182  SIISIRYYLPLMVLDLISISFFGQMIVRVQSLHSIKQSRFLCPYIPM 322
            ++I  +YYL L   D++ ++F  +  +   S +S + + F   Y+P+
Sbjct: 907  ALIRYKYYLFLRPADILLLNFISESALTFSSHNSSRIALFFFAYVPI 953


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,883,253
Number of Sequences: 59808
Number of extensions: 483431
Number of successful extensions: 1025
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)