BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30333 (801 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U55375-4|AAC69042.3| 287|Caenorhabditis elegans Lim domain fami... 28 8.9 >U55375-4|AAC69042.3| 287|Caenorhabditis elegans Lim domain family protein 6 protein. Length = 287 Score = 27.9 bits (59), Expect = 8.9 Identities = 15/46 (32%), Positives = 20/46 (43%) Frame = +1 Query: 481 VTVCLKTDTLKHVLFKLYFTLSFKCVSCMFLTVLLQSYMYYDIDFF 618 +T+ L TD + V F Y F C SC L Y +D + F Sbjct: 84 MTLLLPTDIVHRVHFMYYHAQCFSCCSCQRPFNLGDEYHVFDGEVF 129 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,918,428 Number of Sequences: 27780 Number of extensions: 371923 Number of successful extensions: 898 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 864 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 898 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1956310428 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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