Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30333
         (801 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80640.1 68414.m09463 protein kinase family protein contains ...    31   1.2  
At3g45640.1 68416.m04929 mitogen-activated protein kinase, putat...    28   6.3  
At2g23300.1 68415.m02781 leucine-rich repeat transmembrane prote...    28   6.3  
At3g57200.1 68416.m06368 hypothetical protein                          28   8.3  

>At1g80640.1 68414.m09463 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 427

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 469 GGSLVTVCLKTDTLKHVLFKLYFTLSFKCVSCMFLTVLL 585
           G  +V V L+ D  K +L  L  + S  CV+ MFL  LL
Sbjct: 55  GPPIVKVVLRQDLNKKILIALIVSSSLLCVTVMFLVYLL 93


>At3g45640.1 68416.m04929 mitogen-activated protein kinase, putative
           / MAPK, putative (MPK3) identical to mitogen-activated
           protein kinase homolog (AtMPK3)[Arabidopsis thaliana]
           SWISS-PROT:Q39023; PMID:12119167
          Length = 370

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 53  IGCPTLKTQTNICFAVEFVRMAVPTRAGSQYALPPAKLL--LNFESIISIRYYLP 211
           I C  L T+TN   A++ +  A      ++  L   KLL  L+ E+II+IR  +P
Sbjct: 51  IVCSVLDTETNELVAMKKIANAFDNHMDAKRTLREIKLLRHLDHENIIAIRDVVP 105


>At2g23300.1 68415.m02781 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 773

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 787 LAGSSQWSLPIRS*ILRSTALVRASVNKFSQVEPVSSPTGPGVTGIAPYATSE 629
           LAG + ++    S  + S+  + AS  +F  + P  SP+   V  I+PY   E
Sbjct: 607 LAGDTSYNRASGSSRIFSSKRLTASSREFGTIGPTPSPSPSSVGPISPYCAPE 659


>At3g57200.1 68416.m06368 hypothetical protein
          Length = 504

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +2

Query: 56  GCPTLKTQTNICFAVEFVRMAVPTRAGSQYAL---PPAKLLLNFESIISIRYYLPLMVL- 223
           GC   K     CF +EF R  V  +  +++ +      KL L  + I++ R Y P++++ 
Sbjct: 370 GCKPTKVDVKRCFMLEFDRARVQRKCCNEHVVWTDEKLKLKLLRKGILT-RIYAPMVIIQ 428

Query: 224 DLISISFFGQMIV 262
           +L     F  +++
Sbjct: 429 ELREAGVFSSVVI 441


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,630
Number of Sequences: 28952
Number of extensions: 336471
Number of successful extensions: 734
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)