Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30332X
(446 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204; Euka... 113 2e-24
UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4; Bilateria|... 103 1e-21
UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3; Eukary... 100 2e-20
UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2; Ost... 99 4e-20
UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56; Euk... 94 1e-18
UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3; Eukary... 56 3e-07
UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole ge... 52 6e-06
UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1; Enceph... 50 2e-05
UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1; ... 49 4e-05
UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S riboso... 48 7e-05
UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102... 42 0.008
UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiel... 40 0.019
UniRef50_A3H6U3 Cluster: 50S ribosomal protein L15; n=1; Caldivi... 38 0.099
UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1; ... 36 0.40
UniRef50_A5B3P3 Cluster: Putative uncharacterized protein; n=1; ... 36 0.53
UniRef50_Q1VHW7 Cluster: Putative uncharacterized protein; n=1; ... 34 1.6
UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse t... 32 4.9
UniRef50_A1S9V5 Cluster: Putative uncharacterized protein; n=1; ... 31 8.6
UniRef50_A2QDS6 Cluster: Contig An02c0250, complete genome; n=8;... 31 8.6
UniRef50_Q8KAJ0 Cluster: 50S ribosomal protein L15; n=13; Bacter... 31 8.6
>UniRef50_P46776 Cluster: 60S ribosomal protein L27a; n=204;
Eukaryota|Rep: 60S ribosomal protein L27a - Homo sapiens
(Human)
Length = 148
Score = 113 bits (271), Expect = 2e-24
Identities = 50/92 (54%), Positives = 60/92 (65%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNK 181
TRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ H ++N+
Sbjct: 8 TRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQ 67
Query: 182 KVCPVLNVDKRWTLVSEQTRLKYALLQMARAP 277
CP +N+DK WTLVSEQTR+ A + AP
Sbjct: 68 SFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99
Score = 80.6 bits (190), Expect = 1e-14
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = +1
Query: 265 GKGPVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
G P+I++V++GYYK+L KGKLPKQPVIV AKFFS+ AE+ IK VGGACVL A
Sbjct: 96 GAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>UniRef50_A1BQ56 Cluster: Ribosomal protein L27a; n=4;
Bilateria|Rep: Ribosomal protein L27a - Ascaris suum
(Pig roundworm) (Ascaris lumbricoides)
Length = 133
Score = 103 bits (248), Expect = 1e-21
Identities = 42/58 (72%), Positives = 48/58 (82%)
Frame = +2
Query: 80 NAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNKKVCPVLNVDKRWTLVSEQTRLKYA 253
NAGG+HHHRIN DKYHPGYFGK+GMRN H RKN CP +N+DK W+LVSE+TR YA
Sbjct: 20 NAGGQHHHRINFDKYHPGYFGKVGMRNFHVRKNGLYCPTVNLDKLWSLVSEKTRTTYA 77
Score = 79.0 bits (186), Expect = 4e-14
Identities = 37/52 (71%), Positives = 45/52 (86%)
Frame = +1
Query: 268 KGPVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
K PVI++VKAGY+K+L KG LPKQPVIV AKFFS++AE+ IK VGGAC+L A
Sbjct: 82 KAPVIDVVKAGYFKVLGKGLLPKQPVIVKAKFFSRTAEQKIKGVGGACILVA 133
>UniRef50_Q00454 Cluster: 60S ribosomal protein L27a; n=3;
Eukaryota|Rep: 60S ribosomal protein L27a - Tetrahymena
thermophila
Length = 149
Score = 100 bits (239), Expect = 2e-20
Identities = 52/114 (45%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXN--AGGEHHHRINMDKYHPGYFGKLGMRNVHFRK 175
TRKLRGHVS AGG HHHRI M+K+HPGY+GKLGMR H +K
Sbjct: 8 TRKLRGHVSHGHGRVGKHRKGGCRGGRGKAGGMHHHRILMEKWHPGYYGKLGMRTFHLKK 67
Query: 176 NKKVCPVLNVDKRWTLVSEQTRLKYALLQMARAPSSILSKLDTTSCYAKANSPN 337
N CPV+N+DK W+LVS+ TR KYA + P ++K K PN
Sbjct: 68 NPLHCPVVNIDKLWSLVSDATRQKYA-EDKKKVPVIDVTKAGFFKVLGKGRLPN 120
Score = 72.9 bits (171), Expect = 3e-12
Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Frame = +1
Query: 223 SL*TDEAEVCIAPDGKG-PVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDV 399
SL +D A D K PVI++ KAG++K+L KG+LP QPV+V AK+FSK+AE+ I V
Sbjct: 82 SLVSDATRQKYAEDKKKVPVIDVTKAGFFKVLGKGRLPNQPVVVKAKYFSKTAERRIVAV 141
Query: 400 GGACVLSA 423
GGACVL+A
Sbjct: 142 GGACVLTA 149
>UniRef50_Q00V89 Cluster: 60s ribosomal protein L15/L27; n=2;
Ostreococcus|Rep: 60s ribosomal protein L15/L27 -
Ostreococcus tauri
Length = 198
Score = 99.1 bits (236), Expect = 4e-20
Identities = 50/111 (45%), Positives = 61/111 (54%)
Frame = +2
Query: 5 RKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNKK 184
RK RGHVS AGG+HHHRI MDKYHPGYFGK+GMR+ H KN+
Sbjct: 60 RKKRGHVSAGHGRIGKHRKHPAGRGMAGGQHHHRIMMDKYHPGYFGKVGMRHFHKLKNQT 119
Query: 185 VCPVLNVDKRWTLVSEQTRLKYALLQMARAPSSILSKLDTTSCYAKANSPN 337
VCP +N+DK WTLV + R + A ++AP L+ K PN
Sbjct: 120 VCPTINIDKLWTLVGTEKREECA-KNTSQAPVIDLTDHGIFKLLGKGQLPN 169
Score = 70.5 bits (165), Expect = 2e-11
Identities = 32/64 (50%), Positives = 45/64 (70%)
Frame = +1
Query: 232 TDEAEVCIAPDGKGPVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGAC 411
T++ E C + PVI++ G +KLL KG+LP QPV+V ++ SK AEK IK+VGGAC
Sbjct: 135 TEKREECAKNTSQAPVIDLTDHGIFKLLGKGQLPNQPVVVKCRYISKLAEKKIKEVGGAC 194
Query: 412 VLSA 423
+L+A
Sbjct: 195 ILTA 198
>UniRef50_Q9LR33 Cluster: 60S ribosomal protein L27a-2; n=56;
Eukaryota|Rep: 60S ribosomal protein L27a-2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 146
Score = 93.9 bits (223), Expect = 1e-18
Identities = 42/81 (51%), Positives = 49/81 (60%)
Frame = +2
Query: 5 RKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNKK 184
RK RGHVS NAGG HHHRI DKYHPGYFGK+GMR H +NK
Sbjct: 9 RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKF 68
Query: 185 VCPVLNVDKRWTLVSEQTRLK 247
CP++N+DK W+LV E + K
Sbjct: 69 FCPIVNLDKLWSLVPEDVKAK 89
Score = 54.0 bits (124), Expect = 1e-06
Identities = 26/51 (50%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
Frame = +1
Query: 274 PVINIVKAGYYKLLCKGKLPK-QPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
P+I++ + G++K+L KG LP+ +P +V AK SK+AEK IK+ GGA VL+A
Sbjct: 96 PLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146
>UniRef50_Q9AW02 Cluster: 60S ribosomal protein L27A; n=3;
Eukaryota|Rep: 60S ribosomal protein L27A - Guillardia
theta (Cryptomonas phi)
Length = 144
Score = 56.4 bits (130), Expect = 3e-07
Identities = 27/70 (38%), Positives = 35/70 (50%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNK 181
+RK RGHVS N+GG+HHH+I +KYH +FGK GMR K
Sbjct: 8 SRKKRGHVSSGHGRVGKHRKHPGGRGNSGGQHHHKIFFEKYHKKHFGKTGMRYYRKLKQN 67
Query: 182 KVCPVLNVDK 211
+N+DK
Sbjct: 68 NFNKSINLDK 77
Score = 37.9 bits (84), Expect = 0.099
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 298 GYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLS 420
G K+L +G++ ++P ++ A FSK A K IK GG C+L+
Sbjct: 103 GMSKVLGRGRMVQKPFVIKANSFSKVAVKKIKKAGGYCILT 143
>UniRef50_A7QSF4 Cluster: Chromosome chr12 scaffold_159, whole
genome shotgun sequence; n=3; Vitis vinifera|Rep:
Chromosome chr12 scaffold_159, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 151
Score = 52.0 bits (119), Expect = 6e-06
Identities = 19/37 (51%), Positives = 29/37 (78%)
Frame = +2
Query: 116 DKYHPGYFGKLGMRNVHFRKNKKVCPVLNVDKRWTLV 226
DK+HPG FGK+GMR+ H + K CP++++DK W++V
Sbjct: 28 DKHHPGNFGKVGMRHFHKLRIKLHCPIVHIDKLWSMV 64
>UniRef50_O62581 Cluster: 60S ribosomal protein L27a; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L27a
- Encephalitozoon cuniculi
Length = 147
Score = 50.4 bits (115), Expect = 2e-05
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNK 181
TRKLRGHVS AGG H + ++HP Y GK GMR H ++N
Sbjct: 8 TRKLRGHVSHGYGRVGKHRKHSGGRGLAGGFSHMKTFFTRFHPDYHGKRGMRVYHRKENS 67
Query: 182 KVCPVLNVDKRWTLVSEQTRLKY 250
++ + W ++ ++ R +
Sbjct: 68 DYARPISSARLWGMIPKEQRYDF 90
Score = 36.7 bits (81), Expect = 0.23
Identities = 19/52 (36%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +1
Query: 268 KGPVINIVKAGYYKLLCKGKLP-KQPVIV*AKFFSKSAEKIIKDVGGACVLS 420
K PVI++ + GY+ ++ GKL ++P++V A++F+ SA++ I VGG +++
Sbjct: 96 KVPVIDVREFGYH-VVVGGKLSLERPIVVKARYFTPSAKEEITKVGGKWIIT 146
>UniRef50_Q4P992 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 187
Score = 49.2 bits (112), Expect = 4e-05
Identities = 26/50 (52%), Positives = 33/50 (66%)
Frame = +1
Query: 274 PVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
PVI+ + AGY K+L KG+LP P IV A++ S AEK IK+ GG L A
Sbjct: 138 PVIDTLAAGYGKVLGKGRLPALPCIVKARWVSSLAEKKIKEAGGVVKLVA 187
Score = 48.4 bits (110), Expect = 7e-05
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 89 GEHHHRINMDKYHPGYFGKLGMRNVHFRKNKKVCPVLNVDKRWTLVSEQTR 241
G ++ + YFGK+GMR+ H +N PV+N+DK WTLV + R
Sbjct: 77 GSQEMEVDREIGRDSYFGKVGMRHFHLTRNSSFRPVVNLDKLWTLVPAEQR 127
Score = 48.0 bits (109), Expect = 9e-05
Identities = 22/43 (51%), Positives = 23/43 (53%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHP 130
TRK RGHVS AGG+HHHR NMDKYHP
Sbjct: 8 TRKHRGHVSAGNGRVGKHRKHPGGRGLAGGQHHHRTNMDKYHP 50
>UniRef50_UPI0000DA3FAD Cluster: PREDICTED: similar to 60S ribosomal
protein L27a; n=1; Rattus norvegicus|Rep: PREDICTED:
similar to 60S ribosomal protein L27a - Rattus
norvegicus
Length = 86
Score = 48.4 bits (110), Expect = 7e-05
Identities = 25/41 (60%), Positives = 31/41 (75%)
Frame = +1
Query: 301 YYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
YYK+ K KLPKQPV+V A+ S+ AE+ I+ VGGACVL A
Sbjct: 46 YYKVPGKRKLPKQPVMVKAEGSSRRAEEKIEGVGGACVLVA 86
Score = 35.5 bits (78), Expect = 0.53
Identities = 19/44 (43%), Positives = 20/44 (45%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPG 133
TRK +GHVS NAGGEH HRIN PG
Sbjct: 8 TRKFQGHVSDSHSRISKHHKHRGGQRNAGGEHLHRINCYYKVPG 51
>UniRef50_P53143 Cluster: Putative uncharacterized protein YGL102C;
n=2; Saccharomycetaceae|Rep: Putative uncharacterized
protein YGL102C - Saccharomyces cerevisiae (Baker's
yeast)
Length = 142
Score = 41.5 bits (93), Expect = 0.008
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = -2
Query: 250 ILQPRLFRD*CPTLIYVQNWTDLLVLSKVDISHAKFAKVSRMVLVHVDXXXXXXXXXXXX 71
+L +F D CP + VQ+W + L V++SH +++ MV +HV+
Sbjct: 63 VLVSLVFWDQCPQFVQVQDWLPEMSLLLVEVSHTNLTEITWMVFIHVNSVVMLTTGHTST 122
Query: 70 XXXXXVLSDTTMS 32
VL+DTT +
Sbjct: 123 TGVLSVLTDTTFT 135
>UniRef50_Q3LW97 Cluster: Ribosomal protein L27a; n=1; Bigelowiella
natans|Rep: Ribosomal protein L27a - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 151
Score = 40.3 bits (90), Expect = 0.019
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRK 175
+RK+RG S +GG+HHH+I ++Y YF K GMR + K
Sbjct: 8 SRKMRGKNSSGHGRINKHRKNPGGKGKSGGQHHHKIIFERYRETYFRKTGMRIYNLEK 65
>UniRef50_A3H6U3 Cluster: 50S ribosomal protein L15; n=1; Caldivirga
maquilingensis IC-167|Rep: 50S ribosomal protein L15 -
Caldivirga maquilingensis IC-167
Length = 147
Score = 37.9 bits (84), Expect = 0.099
Identities = 21/55 (38%), Positives = 33/55 (60%)
Frame = +1
Query: 253 IAPDGKGPVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVL 417
I +G +I++ + GY KLL +GK+ K PV+V + S A K IK+ GG ++
Sbjct: 92 IKMEGDKYIIDLTQLGYGKLLGEGKIQK-PVVVKVRAASAKAIKAIKEAGGEVLI 145
>UniRef50_Q9LPV3 Cluster: Putative 60S ribosomal protein L27a-1;
n=1; Arabidopsis thaliana|Rep: Putative 60S ribosomal
protein L27a-1 - Arabidopsis thaliana (Mouse-ear cress)
Length = 104
Score = 35.9 bits (79), Expect = 0.40
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 98 HHRINMDKYHPGYFGK--LGMRNVHFRKNKKVCPVLNVDKRWTLV 226
H R + PG G +GMR H +NK C ++N+DK W++V
Sbjct: 19 HGRFGKHRKLPGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMV 63
>UniRef50_A5B3P3 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 181
Score = 35.5 bits (78), Expect = 0.53
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3
Query: 210 LSTFKTGQTFLFFLKWTFLMPSLPKYPGWYLS 115
LST+ GQ L W L+P+ PK PGW LS
Sbjct: 5 LSTWTIGQWSLMRSLWKCLIPTFPKLPGWCLS 36
>UniRef50_Q1VHW7 Cluster: Putative uncharacterized protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: Putative
uncharacterized protein - Psychroflexus torquis ATCC
700755
Length = 223
Score = 33.9 bits (74), Expect = 1.6
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = -1
Query: 428 IYADSTQAPPTSLIIFSADFEKNFAYT------MTGCLGSLPLHSNL*YPALTILMTGPL 267
I+ DST+ P+ + D ++ YT TGC+ SNL P L+
Sbjct: 85 IFVDSTKGYPSKYGLLKID-DEIITYTGIGTTSFTGCVRGFSGVSNLDQPTRPDLVEFNT 143
Query: 266 PSGAMHTSASSVQRLMSNAYLRSKLDRPSCSF*SG 162
GA HT S V L SN ++R ++ ++ SG
Sbjct: 144 SVGAAHTGGSKVHNL-SNLFIREFFNKLKTTYASG 177
>UniRef50_Q9ZQM0 Cluster: Putative non-LTR retroelement reverse
transcriptase; n=1; Arabidopsis thaliana|Rep: Putative
non-LTR retroelement reverse transcriptase - Arabidopsis
thaliana (Mouse-ear cress)
Length = 1044
Score = 32.3 bits (70), Expect = 4.9
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 115 GQVPSWILWQTWHEKCPL*KEQEGLSSFE 201
GQ+P WILW W+ + L EQ+ +SS +
Sbjct: 842 GQLPIWILWNLWNCRNKLIFEQKHISSMD 870
>UniRef50_A1S9V5 Cluster: Putative uncharacterized protein; n=1;
Shewanella amazonensis SB2B|Rep: Putative
uncharacterized protein - Shewanella amazonensis (strain
ATCC BAA-1098 / SB2B)
Length = 450
Score = 31.5 bits (68), Expect = 8.6
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -3
Query: 285 IDDGALAIWSNAYFSLVCSETNVQRLSTFKTGQTFLFFLKWTFL-MPSLPKYPGWYLSML 109
+ DG IWS F VC+ N S T T L+ L F+ +P + + G Y S+
Sbjct: 43 VGDGLFFIWSTLVFGFVCTIANFLFTSVGYTLYTPLYLLLKNFVPLPKINDFKG-YSSIY 101
Query: 108 IL 103
IL
Sbjct: 102 IL 103
>UniRef50_A2QDS6 Cluster: Contig An02c0250, complete genome; n=8;
Eurotiomycetidae|Rep: Contig An02c0250, complete genome
- Aspergillus niger
Length = 628
Score = 31.5 bits (68), Expect = 8.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 104 RINMDKYHPGYFGKLGMRNVHFRKNKKVCPVLNVDKRWTLVSEQT 238
R+N + Y P YF LG+ +V CP L + +R+ ++ +T
Sbjct: 291 RLNSELYSPSYFTALGITHVDMIFEDGTCPPLPLVRRFIKMAHET 335
>UniRef50_Q8KAJ0 Cluster: 50S ribosomal protein L15; n=13;
Bacteria|Rep: 50S ribosomal protein L15 - Chlorobium
tepidum
Length = 186
Score = 31.5 bits (68), Expect = 8.6
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 301 YYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACV 414
Y+K+L G+L I A FFSKSAE+ I GG V
Sbjct: 110 YFKVLGNGELTSTVTIT-AHFFSKSAEEKIAKAGGKIV 146
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 432,843,122
Number of Sequences: 1657284
Number of extensions: 8732901
Number of successful extensions: 24462
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24445
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23183027945
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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