Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30332X
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    86   2e-18
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    83   2e-17
SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.7  
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ...    26   3.0  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    25   7.0  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.0  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    24   9.3  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 86.2 bits (204), Expect = 2e-18
 Identities = 41/83 (49%), Positives = 47/83 (56%)
 Frame = +2

Query: 2   TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNK 181
           TRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR  H  KN 
Sbjct: 8   TRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNP 67

Query: 182 KVCPVLNVDKRWTLVSEQTRLKY 250
              P +N+D+ WTLV  +TR KY
Sbjct: 68  LWRPTVNLDRLWTLVPNETREKY 90



 Score = 52.4 bits (120), Expect = 3e-08
 Identities = 24/50 (48%), Positives = 35/50 (70%)
 Frame = +1

Query: 274 PVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
           PVIN++++GY K+L KG+LP  PVI+  ++ S+ AE+ IK  GG   L A
Sbjct: 99  PVINVLQSGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIKQAGGVVELIA 148


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 82.6 bits (195), Expect = 2e-17
 Identities = 39/83 (46%), Positives = 46/83 (55%)
 Frame = +2

Query: 2   TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNK 181
           TRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR  H  KN 
Sbjct: 8   TRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRRFHLMKNP 67

Query: 182 KVCPVLNVDKRWTLVSEQTRLKY 250
              P +N+D+ WTL+  + R KY
Sbjct: 68  LWRPTVNLDRLWTLLPNEARDKY 90



 Score = 53.6 bits (123), Expect = 1e-08
 Identities = 25/50 (50%), Positives = 36/50 (72%)
 Frame = +1

Query: 274 PVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
           PVIN++++GY K+L KG+LP+ PVIV  ++ S+ AE+ IK  GG   L A
Sbjct: 99  PVINVLQSGYGKVLGKGRLPETPVIVQTRYVSRRAEEKIKQAGGVVELIA 148


>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 325 KLPKQPVIV*AKFFSKSAEKIIKDV 399
           K P++P+I+  +F+S   E+ IKD+
Sbjct: 15  KNPQKPLIITKRFYSTPGERRIKDI 39


>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
           Atp23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 185

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 209 YLRSKLDRPSCSF*SGHFSCQVCQSIQDG 123
           +L++ LDR +C+  +   SCQ C +   G
Sbjct: 31  FLKTALDRLNCNIEAKDISCQPCDAQSTG 59


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 285 IDDGALAIWSNAYFSLVCSETNVQRL 208
           + + AL +WSN YF+ + S+  V  L
Sbjct: 522 VAERALCLWSNEYFTSLVSQNVVTLL 547


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 115 GQVPSWILWQTWHEKCPL*KEQEGLSSFERR*ALDI 222
           G  PS IL Q  HE     K+Q    SF ++ A+D+
Sbjct: 47  GLTPSAILQQK-HENAQQGKKQNNSKSFSKKPAIDV 81


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 288 NIDDGALAIWSNAYFSLVCSETNVQRLSTFKTG 190
           ++ D A A  S  YF+L C E +++    F+ G
Sbjct: 320 SVMDNAGAYLSEGYFALNCDEIDLEAALIFQFG 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,775,177
Number of Sequences: 5004
Number of extensions: 36619
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)