Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30332X
(446 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10) 81 5e-16
SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08) 31 0.57
SB_1918| Best HMM Match : Drf_FH1 (HMM E-Value=2.9) 30 0.76
SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43) 28 4.0
SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_3130| Best HMM Match : DUF983 (HMM E-Value=7.9) 27 5.3
SB_59149| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 27 7.1
SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022) 27 7.1
SB_53807| Best HMM Match : MCM (HMM E-Value=0) 27 9.3
>SB_4350| Best HMM Match : L15 (HMM E-Value=3.9e-10)
Length = 173
Score = 80.6 bits (190), Expect = 5e-16
Identities = 40/54 (74%), Positives = 44/54 (81%)
Frame = +1
Query: 262 DGKGPVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
DG PVI++VKAGYYK+L KG LPKQPVIV AKFFS+ AE IK VGGACVL A
Sbjct: 120 DGPVPVIDVVKAGYYKVLGKGLLPKQPVIVKAKFFSRRAEDKIKAVGGACVLMA 173
Score = 60.5 bits (140), Expect = 6e-10
Identities = 26/49 (53%), Positives = 34/49 (69%)
Frame = +2
Query: 104 RINMDKYHPGYFGKLGMRNVHFRKNKKVCPVLNVDKRWTLVSEQTRLKY 250
R + + HPGYFGK+GMR+ H +N P +N+DK W+LVSEQTR Y
Sbjct: 67 RGSYEAIHPGYFGKVGMRHFHLTRNAYHKPSINLDKVWSLVSEQTRQNY 115
>SB_3035| Best HMM Match : PAN (HMM E-Value=2.9e-08)
Length = 240
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -1
Query: 158 FSCQVCQSIQDGTCPC*FCDGAHHQHYHDLLDAYGA 51
F +C+S T PC D H +H DL+D GA
Sbjct: 60 FMNNLCRSYNYNTTPCQLSDSDHLEHPSDLVDKPGA 95
>SB_1918| Best HMM Match : Drf_FH1 (HMM E-Value=2.9)
Length = 188
Score = 30.3 bits (65), Expect = 0.76
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLC 318
+VCI P G GP + I+ GY LC
Sbjct: 104 DVCIIPPGYGPDVCIIPTGYGPYLC 128
Score = 30.3 bits (65), Expect = 0.76
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLCK-GKL 330
+VCI P G GP + I+ +GY +C GKL
Sbjct: 159 DVCIIPPGYGPDVYIIPSGYGPDVCNIGKL 188
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLC 318
+VCI P G GP + I+ GY +C
Sbjct: 49 DVCIIPPGYGPDVCIIPPGYGPDVC 73
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLC 318
+VCI P G GP + I+ GY +C
Sbjct: 60 DVCIIPPGYGPDVCIIPPGYGPDVC 84
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLC 318
+VCI P G GP + I+ GY +C
Sbjct: 93 DVCIIPPGYGPDVCIIPPGYGPDVC 117
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLC 318
+VCI P G GP + I+ GY +C
Sbjct: 137 DVCIIPPGYGPDVCIIPPGYGPDVC 161
Score = 26.6 bits (56), Expect = 9.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 247 VCIAPDGKGPVINIVKAGYYKLLC 318
VCI P G GP + I+ GY +C
Sbjct: 17 VCIIPPGYGPDVCIIPPGYGPDVC 40
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGY 303
+VCI P G GP + I+ GY
Sbjct: 148 DVCIIPPGYGPDVCIIPPGY 167
>SB_13654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1451
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -1
Query: 269 LPSGAMHTSASSVQRLMSNAYLRSKL--DRPSCSF*SGHFSCQVCQSIQDGTCP 114
LP+G + SAS++ + S+ +K+ D P C F C + S G CP
Sbjct: 134 LPTGIVEQSASNIHNIKSSMSQNNKVRQDDPLCKF------CGLRHSFSQGKCP 181
>SB_53823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 27.9 bits (59), Expect = 4.0
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = +2
Query: 194 VLNVDKRWTLVSEQTRLKYALLQMARAPSSILSKLDTTSCYAK--ANSPNNLS 346
VL+ DK+ + Y L+ + SS L LDT C K NSP NL+
Sbjct: 577 VLDFDKKCARAHPEVLRFYGRLRRDQKMSSKLQALDTLLCPKKYPKNSPGNLT 629
>SB_20301| Best HMM Match : Drf_FH1 (HMM E-Value=0.43)
Length = 346
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLC 318
+VCI P G GP + I+ GY +C
Sbjct: 115 DVCIIPPGYGPDVYIIPPGYGPDVC 139
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLC 318
+VCI P G GP + I+ GY +C
Sbjct: 159 DVCIIPPGYGPDVCIIPPGYGPDVC 183
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLC 318
+VCI P G GP + I+ GY +C
Sbjct: 170 DVCIIPPGYGPDVCIIPPGYGPDVC 194
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLC 318
+VCI P G GP + I+ GY +C
Sbjct: 181 DVCIIPPGYGPDVCIIPPGYGPDVC 205
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLC 318
+VCI P G GP + I+ GY +C
Sbjct: 192 DVCIIPPGYGPDVCIIPPGYGPDVC 216
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLC 318
+VCI P G GP + I+ GY +C
Sbjct: 302 DVCIIPPGYGPDVCIIPPGYGPDVC 326
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGYYKLLC 318
+VCI P G GP + I+ A Y +C
Sbjct: 280 DVCIIPPGYGPDVYIIPADYGPDVC 304
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 244 EVCIAPDGKGPVINIVKAGY 303
+VCI P G GP + I+ GY
Sbjct: 269 DVCIIPPGYGPDVCIIPPGY 288
>SB_49877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 607
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 247 LQPRLFRD*CPTLIYVQNWTDLLVLSKVDISHAKFAKVS 131
+QP + RD CP I + ++ D+ AK AK++
Sbjct: 130 IQPTIHRDLCPKNILILKKDSVITAKITDVGLAKMAKMN 168
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +2
Query: 251 ALLQMARAPSSILSKLDTTSCYAKANSPN 337
AL A APS +L KL T+ Y K N P+
Sbjct: 207 ALQGKANAPSDLLMKLARTTPYYKRNRPH 235
>SB_3130| Best HMM Match : DUF983 (HMM E-Value=7.9)
Length = 94
Score = 27.5 bits (58), Expect = 5.3
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 312 QLVVSSFDNIDDGALAIWSNAYFSLVCSETNVQRLSTFK-TGQTFLFF 172
++V SSF + GA+A W+ FS + +QRL T FLFF
Sbjct: 8 KVVTSSFQ--ESGAIAQWNGLRFSSKRTGVRIQRLPTCSPVTLPFLFF 53
>SB_59149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 404 PPTSLIIFSADFEKNFAYTMTGCLGSLPLHSN 309
P T+ ++SA +K+F T++ C S HSN
Sbjct: 15 PITAEEVWSAQCQKDFVVTVSNCRDSEDCHSN 46
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -1
Query: 413 TQAPPTSLIIFSADFEKNFAYTMTGCLGSLPLHSNL*YPALTIL 282
T P S II A++EK F T G SL + +L + ALT +
Sbjct: 821 TVLPLLSSIIDPANYEKEFEETEEGDESSLKANDHLLFNALTTI 864
>SB_28034| Best HMM Match : zf-CCHC (HMM E-Value=0.022)
Length = 222
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = -1
Query: 419 DSTQAPPTSLIIFSADFEKNFAYTMTGCLGSLPLHSN 309
D+ PPT L S DF K +TG L SN
Sbjct: 69 DAVSGPPTDLATVSDDFTKRVINGVTGALAKTIPSSN 105
>SB_53807| Best HMM Match : MCM (HMM E-Value=0)
Length = 789
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 197 KLDRPSCSF*SGHFSCQVCQSIQDGTCP 114
K D P CSF G F Q ++ G+CP
Sbjct: 248 KYDCPKCSFILGPFFQGSDQEVKPGSCP 275
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,703
Number of Sequences: 59808
Number of extensions: 292566
Number of successful extensions: 767
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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