Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30332X
(446 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a pr... 113 3e-25
BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for IM... 113 3e-25
BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a ... 113 3e-25
AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a ... 113 3e-25
AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A ... 113 3e-25
BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a ... 110 2e-24
AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a ... 33 0.34
AY358091-1|AAQ88458.1| 126|Homo sapiens VFLL3057 protein. 30 3.1
AK126225-1|BAC86496.1| 139|Homo sapiens protein ( Homo sapiens ... 30 4.1
>U14968-1|AAA85656.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 113 bits (271), Expect = 3e-25
Identities = 50/92 (54%), Positives = 60/92 (65%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNK 181
TRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ H ++N+
Sbjct: 8 TRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQ 67
Query: 182 KVCPVLNVDKRWTLVSEQTRLKYALLQMARAP 277
CP +N+DK WTLVSEQTR+ A + AP
Sbjct: 68 SFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99
Score = 80.6 bits (190), Expect = 2e-15
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = +1
Query: 265 GKGPVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
G P+I++V++GYYK+L KGKLPKQPVIV AKFFS+ AE+ IK VGGACVL A
Sbjct: 96 GAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC020169-1|AAH20169.1| 147|Homo sapiens Unknown (protein for
IMAGE:3543815) protein.
Length = 147
Score = 113 bits (271), Expect = 3e-25
Identities = 50/92 (54%), Positives = 60/92 (65%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNK 181
TRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ H ++N+
Sbjct: 7 TRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQ 66
Query: 182 KVCPVLNVDKRWTLVSEQTRLKYALLQMARAP 277
CP +N+DK WTLVSEQTR+ A + AP
Sbjct: 67 SFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAP 98
Score = 80.6 bits (190), Expect = 2e-15
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = +1
Query: 265 GKGPVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
G P+I++V++GYYK+L KGKLPKQPVIV AKFFS+ AE+ IK VGGACVL A
Sbjct: 95 GAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 147
>BC005326-1|AAH05326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 113 bits (271), Expect = 3e-25
Identities = 50/92 (54%), Positives = 60/92 (65%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNK 181
TRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ H ++N+
Sbjct: 8 TRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQ 67
Query: 182 KVCPVLNVDKRWTLVSEQTRLKYALLQMARAP 277
CP +N+DK WTLVSEQTR+ A + AP
Sbjct: 68 SFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99
Score = 80.6 bits (190), Expect = 2e-15
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = +1
Query: 265 GKGPVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
G P+I++V++GYYK+L KGKLPKQPVIV AKFFS+ AE+ IK VGGACVL A
Sbjct: 96 GAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>AJ400879-2|CAC35388.1| 106|Homo sapiens ribosomal protein L27a
protein.
Length = 106
Score = 113 bits (271), Expect = 3e-25
Identities = 50/92 (54%), Positives = 60/92 (65%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNK 181
TRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ H ++N+
Sbjct: 8 TRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQ 67
Query: 182 KVCPVLNVDKRWTLVSEQTRLKYALLQMARAP 277
CP +N+DK WTLVSEQTR+ A + AP
Sbjct: 68 SFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99
>AB020236-1|BAA77361.1| 148|Homo sapiens ribosomal protein L27A
protein.
Length = 148
Score = 113 bits (271), Expect = 3e-25
Identities = 50/92 (54%), Positives = 60/92 (65%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNK 181
TRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ H ++N+
Sbjct: 8 TRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQ 67
Query: 182 KVCPVLNVDKRWTLVSEQTRLKYALLQMARAP 277
CP +N+DK WTLVSEQTR+ A + AP
Sbjct: 68 SFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99
Score = 80.6 bits (190), Expect = 2e-15
Identities = 37/53 (69%), Positives = 45/53 (84%)
Frame = +1
Query: 265 GKGPVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
G P+I++V++GYYK+L KGKLPKQPVIV AKFFS+ AE+ IK VGGACVL A
Sbjct: 96 GAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSVGGACVLVA 148
>BC066326-1|AAH66326.1| 148|Homo sapiens ribosomal protein L27a
protein.
Length = 148
Score = 110 bits (264), Expect = 2e-24
Identities = 49/92 (53%), Positives = 60/92 (65%)
Frame = +2
Query: 2 TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNK 181
TRKLRGHVS NAGG HHHRIN DKYHPGYFGK+GM++ + ++N+
Sbjct: 8 TRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYNLKRNQ 67
Query: 182 KVCPVLNVDKRWTLVSEQTRLKYALLQMARAP 277
CP +N+DK WTLVSEQTR+ A + AP
Sbjct: 68 SFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAP 99
Score = 74.9 bits (176), Expect = 1e-13
Identities = 35/53 (66%), Positives = 43/53 (81%)
Frame = +1
Query: 265 GKGPVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
G P+I++V++GYYK+L KGKL KQPVIV AK FS+ AE+ IK VGGACVL A
Sbjct: 96 GAAPIIDVVRSGYYKVLGKGKLAKQPVIVKAKLFSRRAEEKIKSVGGACVLVA 148
>AB007178-1|BAA25837.1| 34|Homo sapiens ribosomal protein L27a
protein.
Length = 34
Score = 33.5 bits (73), Expect = 0.34
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2
Query: 197 LNVDKRWTLVSEQTRLKYALLQMARAP 277
+N+DK WTLVSEQTR+ A + AP
Sbjct: 1 VNLDKLWTLVSEQTRVNAAKNKTGAAP 27
>AY358091-1|AAQ88458.1| 126|Homo sapiens VFLL3057 protein.
Length = 126
Score = 30.3 bits (65), Expect = 3.1
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = -3
Query: 156 LMPSLPKYPGWYLSMLIL*WCSPPALPRPPGCLRCFPIRPCP---*LT*PLSFLV 1
L P+LPK+PG ++ L W S P P G + + PCP PL FLV
Sbjct: 53 LSPALPKWPGHLMAELQGPWLSLAHCPSPSGPI----VLPCPFRVQFEPPLQFLV 103
>AK126225-1|BAC86496.1| 139|Homo sapiens protein ( Homo sapiens
cDNA FLJ44237 fis, clone THYMU3007845. ).
Length = 139
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/43 (27%), Positives = 16/43 (37%)
Frame = +3
Query: 294 SWILQVAMQRQTPQTTCHSISKVLLKISREDNQGCGWCLCTIC 422
+W L Q PQ + + L R + C WC C C
Sbjct: 71 AWFLSPVHHSQIPQLAACPLQSLRLSKPRSPGRCCAWCGCLNC 113
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,933,774
Number of Sequences: 237096
Number of extensions: 1422301
Number of successful extensions: 3632
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3625
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3644351872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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