Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30332X
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...   101   2e-22
AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical ...    68   4e-12
AC006675-11|AAK84552.1|  326|Caenorhabditis elegans Serpentine r...    29   2.0  
Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine rece...    28   2.7  
AC006672-8|AAY43997.1|  125|Caenorhabditis elegans Hypothetical ...    27   6.2  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score =  101 bits (243), Expect = 2e-22
 Identities = 44/82 (53%), Positives = 53/82 (64%)
 Frame = +2

Query: 2   TRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNK 181
           TRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR  H  KN+
Sbjct: 8   TRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRVFHLNKNQ 67

Query: 182 KVCPVLNVDKRWTLVSEQTRLK 247
             CP +NV++ W+LV ++ R K
Sbjct: 68  HYCPTVNVERLWSLVPQEVRDK 89



 Score = 67.7 bits (158), Expect = 4e-12
 Identities = 33/56 (58%), Positives = 40/56 (71%)
 Frame = +1

Query: 256 APDGKGPVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
           A  GK PVI+  K GY+K+L KG LP+ P+IV A+FFS  AE+ IK  GGACVL A
Sbjct: 90  ATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGACVLVA 145


>AC087079-8|AAK27871.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37E3.8b protein.
          Length = 88

 Score = 67.7 bits (158), Expect = 4e-12
 Identities = 33/56 (58%), Positives = 40/56 (71%)
 Frame = +1

Query: 256 APDGKGPVINIVKAGYYKLLCKGKLPKQPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
           A  GK PVI+  K GY+K+L KG LP+ P+IV A+FFS  AE+ IK  GGACVL A
Sbjct: 33  ATGGKSPVIDCTKLGYFKVLGKGLLPETPLIVKARFFSHEAEQKIKKAGGACVLVA 88



 Score = 37.1 bits (82), Expect = 0.006
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +2

Query: 152 MRNVHFRKNKKVCPVLNVDKRWTLVSEQTRLK 247
           MR  H  KN+  CP +NV++ W+LV ++ R K
Sbjct: 1   MRVFHLNKNQHYCPTVNVERLWSLVPQEVRDK 32


>AC006675-11|AAK84552.1|  326|Caenorhabditis elegans Serpentine
           receptor, class t protein31 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 270 LAIWSNAYFSLVCSETNVQRLSTFKTGQTFLFFLKWTFLMPSLPKYPGWYLSM 112
           L +W+++    +   TN     TFK+   F+F    TFL+  LP   G Y ++
Sbjct: 116 LGLWASSCLVAMLLVTNRLLDFTFKSAANFMFDKNRTFLVLILPTIYGLYFAI 168


>Z77655-1|CAB01137.1|  393|Caenorhabditis elegans Hypothetical
           protein C56A3.1 protein.
          Length = 393

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 87  PALPRPPGCLRCFPIRPCP 31
           PA P+ P C  C P +PCP
Sbjct: 50  PACPQAPSCPVCPPPQPCP 68


>U41995-1|AAA83459.1|  301|Caenorhabditis elegans Serpentine
           receptor, class x protein47 protein.
          Length = 301

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 214 TLIYVQNWTDLLVLSKVDISHAKFAKVSR 128
           TL  + NWT  L LSKV   H  F  ++R
Sbjct: 16  TLGVIANWTVFLFLSKVPSIHKSFGSLTR 44


>AC006672-8|AAY43997.1|  125|Caenorhabditis elegans Hypothetical
           protein K08D12.7 protein.
          Length = 125

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 223 SL*TDEAEVCIAPDGKGPVINIVKAGYYK 309
           S+  +EA   +AP+G G   N+  +GY K
Sbjct: 51  SMAVEEAPATVAPEGAGAQSNVESSGYRK 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,104,868
Number of Sequences: 27780
Number of extensions: 217424
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)