Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30332X
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC) id...    94   4e-20
At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB) si...    94   4e-20
At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA) si...    36   0.012
At2g16100.1 68415.m01846 hypothetical protein                          29   1.4  
At5g26250.1 68418.m03131 sugar transporter, putative similar to ...    29   1.9  
At2g13900.1 68415.m01542 DC1 domain-containing protein contains ...    28   3.3  
At1g01460.1 68414.m00061 phosphatidylinositol-4-phosphate 5-kina...    28   3.3  
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ...    27   5.8  
At2g24395.1 68415.m02914 chaperone protein dnaJ-related contains...    27   5.8  

>At1g70600.1 68414.m08133 60S ribosomal protein L27A (RPL27aC)
           identical to 60S ribosomal protein L27A GB:P49637
           [Arabidopsis thaliana]
          Length = 146

 Score = 93.9 bits (223), Expect = 4e-20
 Identities = 42/81 (51%), Positives = 49/81 (60%)
 Frame = +2

Query: 5   RKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNKK 184
           RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR  H  +NK 
Sbjct: 9   RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKF 68

Query: 185 VCPVLNVDKRWTLVSEQTRLK 247
            CP++N+DK W+LV E  + K
Sbjct: 69  FCPIVNLDKLWSLVPEDVKAK 89



 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 26/51 (50%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
 Frame = +1

Query: 274 PVINIVKAGYYKLLCKGKLPK-QPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
           P+I++ + G++K+L KG LP+ +P +V AK  SK+AEK IK+ GGA VL+A
Sbjct: 96  PLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>At1g23290.1 68414.m02913 60S ribosomal protein L27A (RPL27aB)
           similar to 60S RIBOSOMAL PROTEIN L27A GB:P49637
           GI:1710530 from [Arabidopsis thaliana]
          Length = 146

 Score = 93.9 bits (223), Expect = 4e-20
 Identities = 42/81 (51%), Positives = 49/81 (60%)
 Frame = +2

Query: 5   RKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRNVHFRKNKK 184
           RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR  H  +NK 
Sbjct: 9   RKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKF 68

Query: 185 VCPVLNVDKRWTLVSEQTRLK 247
            CP++N+DK W+LV E  + K
Sbjct: 69  FCPIVNLDKLWSLVPEDVKAK 89



 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 26/51 (50%), Positives = 39/51 (76%), Gaps = 1/51 (1%)
 Frame = +1

Query: 274 PVINIVKAGYYKLLCKGKLPK-QPVIV*AKFFSKSAEKIIKDVGGACVLSA 423
           P+I++ + G++K+L KG LP+ +P +V AK  SK+AEK IK+ GGA VL+A
Sbjct: 96  PLIDVTQHGFFKVLGKGHLPENKPFVVKAKLISKTAEKKIKEAGGAVVLTA 146


>At1g12960.1 68414.m01505 60S ribosomal protein L27A (RPL27aA)
           similar to GB:BAA96068 from [Panax ginseng]
          Length = 104

 Score = 35.9 bits (79), Expect = 0.012
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 98  HHRINMDKYHPGYFGK--LGMRNVHFRKNKKVCPVLNVDKRWTLV 226
           H R    +  PG  G   +GMR  H  +NK  C ++N+DK W++V
Sbjct: 19  HGRFGKHRKLPGSRGNAGVGMRYFHKLRNKFYCQIVNLDKLWSMV 63


>At2g16100.1 68415.m01846 hypothetical protein 
          Length = 250

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 94  APSQNQHGQVPSWILWQTWHEK 159
           +P  +Q  Q+P WILW+ W  +
Sbjct: 20  SPRTSQFHQLPLWILWRIWKSR 41


>At5g26250.1 68418.m03131 sugar transporter, putative similar to
           hexose transporter [Lycopersicon esculentum] GI:5734440,
           sugar carrier protein {Ricinus communis} SP|Q41144,
           monosaccharide transporter [Nicotiana tabacum] GI:19885;
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 507

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -3

Query: 273 ALAIWSNAYFSLVCSETNVQRLSTFKTGQTFLFFLKWTFLM 151
           ALA+  N +F+ V ++  +  L   K+G  F FF  W  +M
Sbjct: 421 ALAVSCNMFFTFVIAQAFLSMLCAMKSG-IFFFFSGWIVVM 460


>At2g13900.1 68415.m01542 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 661

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 167 SGHFSCQVCQSIQDGTCPC*FCDGAHHQHYH 75
           SG +SC VC+   D  C    C+  +H   H
Sbjct: 305 SGKWSCGVCRQKVDNNCGAYTCNKCNHYFVH 335


>At1g01460.1 68414.m00061 phosphatidylinositol-4-phosphate 5-kinase
           family protein similar to
           phosphatidylinositol-4-phosphate 5-kinase AtPIP5K1
           [Arabidopsis thaliana] GI:3702691; contains Pfam profile
           PF01504: Phosphatidylinositol-4-phosphate 5-Kinase
          Length = 427

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -3

Query: 249 YFSLVCSETNVQRLSTFKTGQTFLFFLKWTFLMPSLPK 136
           Y   +C++  +++LST K G  FL      FL+  L K
Sbjct: 61  YMKSICNDETLRKLSTSKVGNMFLLSKDDRFLIKILRK 98


>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 167 SGHFSCQVCQSIQDGTCPC*FCDGAHHQHYH 75
           SG +SC VC+   D  C    C+   H   H
Sbjct: 303 SGKWSCGVCRKKVDNNCGAYTCNKCSHYFVH 333


>At2g24395.1 68415.m02914 chaperone protein dnaJ-related contains
           Pfam PF00684 : DnaJ central domain (4 repeats)
          Length = 132

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +3

Query: 309 VAMQRQTPQTTCHSISKVLLKISREDNQGCGWCLCTICVNNK 434
           V +Q Q PQ            I  ED  G GW LC  C   K
Sbjct: 44  VPLQEQEPQLDQSQQGDDNAVILCEDCNGKGWLLCDFCKGQK 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,492,291
Number of Sequences: 28952
Number of extensions: 201178
Number of successful extensions: 580
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)