Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30330
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.7  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    22   4.7  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    21   6.2  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    21   6.2  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 137 GRDHDRVHEDRRGLYLH 87
           G+D   VH  RRGL LH
Sbjct: 14  GQDKHMVHWFRRGLRLH 30


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 477 RQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNK 373
           ++  K NS +NGS D +      ++    + NG+K
Sbjct: 275 KEKDKPNSTTNGSPDVIKVEPELSDSEKTLCNGSK 309


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 498 TSSNW*NRQLSKDNSASNGSGD 433
           T+S+   R  +  NSASN SGD
Sbjct: 335 TASSKNYRSATGGNSASNSSGD 356


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 575 PDCYRTTLAGDLARDGMWLSD 513
           PD  R+  AG    DG  LSD
Sbjct: 418 PDQQRSIFAGKQLEDGRTLSD 438


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 575 PDCYRTTLAGDLARDGMWLSD 513
           PD  R+  AG    DG  LSD
Sbjct: 86  PDQQRSIFAGKQLEDGRTLSD 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,257
Number of Sequences: 336
Number of extensions: 2914
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)