BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30330 (615 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 149 4e-37 SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 28 1.2 SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo... 27 1.6 SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 6.6 SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces p... 25 8.7 SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 25 8.7 SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 25 8.7 >SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces pombe|chr 3|||Manual Length = 253 Score = 149 bits (360), Expect = 4e-37 Identities = 67/99 (67%), Positives = 84/99 (84%) Frame = +1 Query: 214 KNRQTREHLLVFFTIKEFEIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 393 K + E L IKE++I+D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+ Sbjct: 48 KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106 Query: 394 NGHIGLGVKCSKEVATAIRCAIILAKLSVLPVRRGYWGT 510 +GH+GLG+KC+KEVATAIR AII+ KLS++P+RRGYWGT Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGT 145 Score = 64.9 bits (151), Expect = 9e-12 Identities = 27/37 (72%), Positives = 32/37 (86%) Frame = +3 Query: 504 GYKIGKPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSA 614 G +G PHTVP KV+GKCGSVTVRL+PAPRG G+V+A Sbjct: 144 GTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAA 180 Score = 55.2 bits (127), Expect = 7e-09 Identities = 23/36 (63%), Positives = 30/36 (83%) Frame = +2 Query: 155 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLQSK 262 ++++KEWVPVTKLGRLV+ GKI +E IYL+SL K Sbjct: 28 RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63 >SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 1420 Score = 27.9 bits (59), Expect = 1.2 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = -2 Query: 152 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 27 ++HDHG H + H DR + R R++R ++ PP Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760 >SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 27.5 bits (58), Expect = 1.6 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +1 Query: 193 RPSCSRRKNRQTREHLLVFFTIKEFEIIDFFLGPSLNDE 309 R +++NR+T + LV T+ +FF P L+D+ Sbjct: 265 RVETKKQRNRKTNQTRLVRTTVPNDSFFNFFSPPQLDDD 303 >SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces pombe|chr 1|||Manual Length = 704 Score = 25.4 bits (53), Expect = 6.6 Identities = 14/45 (31%), Positives = 21/45 (46%) Frame = -1 Query: 480 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 346 +R LS + GSG L N+T+ +A+G T +SG Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417 >SPAC140.01 |sdh2||succinate dehydrogenase |Schizosaccharomyces pombe|chr 1|||Manual Length = 252 Score = 25.0 bits (52), Expect = 8.7 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = +2 Query: 518 KATYRPLQGHRQVWFCNSPADSCPSWYWN 604 +A L G + C + SCPS++WN Sbjct: 153 RADRAKLDGLYECILCACCSTSCPSYWWN 181 >SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip41|Schizosaccharomyces pombe|chr 3|||Manual Length = 252 Score = 25.0 bits (52), Expect = 8.7 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Frame = +1 Query: 307 EVLKIMPVQKQTRAGQRTRFKAFVAIGD---NNGHIGLGVKCSKEVATAIRCAIILAKLS 477 E+ +++PVQK AGQ F + D +NG V+ I A ++ +L Sbjct: 123 EIDQVIPVQKILNAGQNLWFNEIILFEDELADNGKSMFDVRARVVQGHLILLARLVVRLD 182 Query: 478 VLPVR 492 + VR Sbjct: 183 KVNVR 187 >SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharomyces pombe|chr 2|||Manual Length = 436 Score = 25.0 bits (52), Expect = 8.7 Identities = 11/37 (29%), Positives = 21/37 (56%) Frame = +2 Query: 263 NSRSLISSSARP*MMRF*RSCLYRNKHVPDSAHVSRH 373 +SR+ I S+ +++ S R KH+P+ ++RH Sbjct: 348 SSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARH 384 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,482,712 Number of Sequences: 5004 Number of extensions: 50597 Number of successful extensions: 142 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 131 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 141 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 269634532 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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